Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H12
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    29   1.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.5  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.5  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 587 TCXSIGEPKITLS---SDLSSALEKDSGNNSL--EPDMEPLKTLRXAAICKIAEACYISV 751
           +C  +   K  LS   S  SS L+KDS +NSL  EP +   K  +   +C      YI  
Sbjct: 249 SCLEVDSVKRLLSGSPSSSSSPLKKDSSSNSLTYEPALTDHKP-QYLVLCVYRSLIYIGD 307

Query: 752 VHNIRASAK 778
           VH   A  +
Sbjct: 308 VHRYLAEVR 316


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 477 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 382
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 434 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 544
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +2

Query: 461 QSKSFTGLYTADTNVIGAVRYGYNLKNDDN----GVQHFEVQPETFTCXSIGEPKITLSS 628
           +  S     +A  N + A    +N++N +N    G  H E   E +    + EP+I  SS
Sbjct: 47  RQNSIAASMSAYPNGMYAGAENHNVENHENYTMVGHDHME---EVYGDDLVNEPRIAYSS 103

Query: 629 DLSSALE-KDSGNN 667
           D+ +  + KD G+N
Sbjct: 104 DIVATFDGKDFGSN 117


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 470  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHFEVQPETFTCXSIGEPKITLSSDLSS 640
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 641  ALEKDS 658
            +L KD+
Sbjct: 896  SLSKDA 901


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,958
Number of Sequences: 5004
Number of extensions: 60000
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)