Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H11
         (1036 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   1.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   1.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   1.6  
AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    30   2.4  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect(2) = 1.6
 Identities = 22/68 (32%), Positives = 22/68 (32%)
 Frame = +1

Query: 355 GXPPXKXXGGGXXXXGPPPXXFFXXXPXKKXXGGXXPPPPXXXXXXXXXXXAKTXTPXPX 534
           G PP    G      GPPP       P     GG  PPPP                P P 
Sbjct: 711 GGPPPPP-GLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISG--GPPPPPPPP 765

Query: 535 XGXXPPPP 558
            G  PPPP
Sbjct: 766 GGCPPPPP 773



 Score = 20.6 bits (41), Expect(2) = 1.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 661 GGXXXXXXPPPPP 699
           GG      PPPPP
Sbjct: 778 GGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect(2) = 1.6
 Identities = 22/68 (32%), Positives = 22/68 (32%)
 Frame = +1

Query: 355 GXPPXKXXGGGXXXXGPPPXXFFXXXPXKKXXGGXXPPPPXXXXXXXXXXXAKTXTPXPX 534
           G PP    G      GPPP       P     GG  PPPP                P P 
Sbjct: 711 GGPPPPP-GLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISG--GPPPPPPPP 765

Query: 535 XGXXPPPP 558
            G  PPPP
Sbjct: 766 GGCPPPPP 773



 Score = 20.6 bits (41), Expect(2) = 1.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 661 GGXXXXXXPPPPP 699
           GG      PPPPP
Sbjct: 778 GGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect(2) = 1.6
 Identities = 22/68 (32%), Positives = 22/68 (32%)
 Frame = +1

Query: 355 GXPPXKXXGGGXXXXGPPPXXFFXXXPXKKXXGGXXPPPPXXXXXXXXXXXAKTXTPXPX 534
           G PP    G      GPPP       P     GG  PPPP                P P 
Sbjct: 294 GGPPPPP-GLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISG--GPPPPPPPP 348

Query: 535 XGXXPPPP 558
            G  PPPP
Sbjct: 349 GGCPPPPP 356



 Score = 20.6 bits (41), Expect(2) = 1.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 661 GGXXXXXXPPPPP 699
           GG      PPPPP
Sbjct: 361 GGFKGGPPPPPPP 373


>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 364 PXKXXGGGXXXXGPPPXXFFXXXPXKKXXGGXXPPPP 474
           P    GGG    G PP       P     GG  PPPP
Sbjct: 20  PSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPP 56



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +3

Query: 363 PXXXXXGGVXXXXAPPPXIFXXXSPXKXXGXGAPPP 470
           P     GG     APPP       P    G GAPPP
Sbjct: 20  PSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPP 55


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 26/114 (22%), Positives = 27/114 (23%)
 Frame = +1

Query: 217 PPXPXGWXLGPXPXXXXXXXXXXXXXXXXKNFXXXKGXXXXXXXXXGXPPXKXXGGGXXX 396
           PP P G    P P                +     KG         G P      G    
Sbjct: 97  PPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASR 156

Query: 397 XGPPPXXFFXXXPXKKXXGGXXPPPPXXXXXXXXXXXAKTXTPXPXXGXXPPPP 558
             PPP          K  G   PPP            A    P P  G   PPP
Sbjct: 157 RPPPPP---------KGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPP 201



 Score = 28.3 bits (60), Expect = 9.5
 Identities = 26/114 (22%), Positives = 27/114 (23%)
 Frame = +1

Query: 217 PPXPXGWXLGPXPXXXXXXXXXXXXXXXXKNFXXXKGXXXXXXXXXGXPPXKXXGGGXXX 396
           PP P G    P P                +     KG         G P      G    
Sbjct: 190 PPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPPPPKGTGSPTPPPTGEPQDLSGEGNASR 249

Query: 397 XGPPPXXFFXXXPXKKXXGGXXPPPPXXXXXXXXXXXAKTXTPXPXXGXXPPPP 558
             PPP          K  G   PPP            A    P P  G   PPP
Sbjct: 250 RPPPPP---------KGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPP 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,331,981
Number of Sequences: 27780
Number of extensions: 246919
Number of successful extensions: 1099
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2741106356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)