Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H06
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    29   3.3  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    29   5.7  
Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 214 LIVFILFYLSTGLTVFYTFRLII 282
           L+  ILF+LS  L+VFY FR ++
Sbjct: 147 LMAVILFFLSALLSVFYQFRFVV 169


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 439 LPFNLKLMVIYVSILGSILGFMVRNMGXYSLNKLLLRYNLRSFLCLI*FIPNLSTYGLSY 618
           +PF+    VI+  I+  ++GF++   G   +   L   ++ +   +I   P LS      
Sbjct: 285 IPFSTAKTVIHSHIISFLIGFLLL-FGNEMMITALYFPSILALGMIIYISPLLSNLKFRP 343

Query: 619 IYLXFRPILFKNIDIG*R-XIYRGXGI 696
            Y+ F  I+F +I +G +  + +G GI
Sbjct: 344 AYVLFLAIIFASITLGLKIGLSKGLGI 370


>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 427 YIIYLPFNLKLMVIYVSILGSILGFMVRNMGXYSLNKLLLRYNLRSFL 570
           Y    P NLKL++    +L  IL   + N+  Y ++K+ L +    FL
Sbjct: 17  YFYNEPLNLKLVISIFELLSYILCGYILNLSIYVMSKIQLFHKNLMFL 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,894,668
Number of Sequences: 27780
Number of extensions: 99528
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)