Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H04
         (989 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 723 PPXPXXPPPXPXXXXP 770
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 715 TXPRXXPPXPPP 750
           T P+  PP PPP
Sbjct: 337 TPPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 803  PPPPPPXP 826
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 661 PXLXPPPPRXGXGXNKXXTXPRXXPPXPPP 750
           P   P  P+ G   N     P   PP  PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 239 PPPPPXNXXXNFXXPPPPXXPPG 307
           P  P      N    PPP  PPG
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 792  SXXPPPPPPQ 821
            S  PPPPPP+
Sbjct: 1856 SPEPPPPPPR 1865



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 803  PPPPPPXPXN 832
            P PPPP P N
Sbjct: 1857 PEPPPPPPRN 1866


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 849 GGXFXLXXGXGGGGGG 802
           GG   +    GGGGGG
Sbjct: 36  GGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,741
Number of Sequences: 438
Number of extensions: 9853
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32774469
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)