Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H03
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   4.5  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    27   4.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 789 GNYRTQINXYKSXDFYNNVXRQNXIHTXRLTRQECWSKRHLYSCFDNAVGN 637
           G   + I+  KS    ++V  +  I +  L++  C+S   L  CF++ + N
Sbjct: 566 GLLNSSISVLKSMRIPSSVSYEAVIISMVLSKNPCFSSEWLIKCFEDMIAN 616


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 77  RNLSQFKMYSKVLLSAALLVCVNAQVSMPPGLRREVSDHQPIFKVSPTPSRYSRLCHLG 253
           R++S   +Y+K   +A +L  VNA +     +  ++S   PI   +  P       HLG
Sbjct: 265 RSISHSSLYTKQSGTAGVLPAVNADIDAANRMNPDISSQFPIAD-NKDPLNADTQAHLG 322


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 215 PTPSRYSRLCHLGQGKWGE 271
           P+P+   R  HL +GKW E
Sbjct: 308 PSPTSARRASHLSEGKWDE 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,510
Number of Sequences: 5004
Number of extensions: 57006
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)