Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_H02
(805 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome s... 101 2e-20
UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase... 100 4e-20
UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399, ... 98 3e-19
UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2; ... 97 5e-19
UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;... 96 1e-18
UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal ... 86 9e-16
UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Ory... 85 1e-15
UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal ... 85 2e-15
UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n... 84 5e-15
UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1; Encephalito... 83 8e-15
UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal ... 83 1e-14
UniRef50_Q00U02 Cluster: Protein involved in transcription start... 81 4e-14
UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA ... 80 6e-14
UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1; ... 75 3e-12
UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1; Tri... 68 3e-10
UniRef50_UPI00004982BE Cluster: conserved hypothetical protein; ... 62 2e-08
UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal ... 61 4e-08
UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein MAL7P1... 36 1.2
UniRef50_Q98RV2 Cluster: Putative uncharacterized protein orf590... 34 3.6
>UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 11
SCAF14979, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 231
Score = 101 bits (242), Expect = 2e-20
Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y ++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPTPDKPNVYDFKTTYVQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ S +FQ C +RFD+++
Sbjct: 66 NDLVRKDKELYTQNGILHMLDRNKRIKSKPERFQNCKDRFDLVV 109
Score = 47.2 bits (107), Expect = 5e-04
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKXV-QKISGV**KI*CHNNCEERVYDQ*LNG 572
K YTQNG+LHMLDRN+RIK ++ + CEERVYDQ + G
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKSKPERFQNCKDRFDLVVTCEERVYDQVVEG 122
>UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase
homolog; n=70; Eukaryota|Rep: SSU72 RNA polymerase II
CTD phosphatase homolog - Homo sapiens (Human)
Length = 194
Score = 100 bits (240), Expect = 4e-20
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a); n=1;
Homo sapiens|Rep: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a) - Homo
sapiens (Human)
Length = 153
Score = 97.9 bits (233), Expect = 3e-19
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK 429
NDL+ K K
Sbjct: 66 NDLLRKDK 73
>UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 235
Score = 97.1 bits (231), Expect = 5e-19
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYDEI 402
L AV CSSNMNRSMEAH L K+GFN++SYG+G +VK+PG + D+PNCYEFG Y++I
Sbjct: 45 LRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYEDI 104
Query: 403 YNDLMEK-XKITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVIIIVKK 546
Y DL K + T ++ S ++FQ FD+++ +++
Sbjct: 105 YADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEE 153
>UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 228
Score = 95.9 bits (228), Expect = 1e-18
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y+++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMY 65
Query: 406 NDLMEKXK 429
NDL+ K K
Sbjct: 66 NDLVRKDK 73
>UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=7; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 206
Score = 86.2 bits (204), Expect = 9e-16
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VC+SN NRSME+H L + G+NV SYGTG V+LPG S D+PN Y FG Y++IY
Sbjct: 9 LKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIY 68
Query: 406 NDLMEK 423
NDL+ +
Sbjct: 69 NDLLSQ 74
>UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Oryza
sativa|Rep: Ssu72-like protein, expressed - Oryza sativa
subsp. japonica (Rice)
Length = 200
Score = 85.4 bits (202), Expect = 1e-15
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +1
Query: 235 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 414
A+VCSSNMNRSMEAH+ L + G +V SYGTG VKLPG S PN Y+FG Y+ IY+DL
Sbjct: 12 AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 71
Query: 415 MEK 423
K
Sbjct: 72 RRK 74
>UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=7; Fungi/Metazoa group|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase ssu72 - Schizosaccharomyces pombe (Fission
yeast)
Length = 197
Score = 85.0 bits (201), Expect = 2e-15
Identities = 36/63 (57%), Positives = 46/63 (73%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L ++V+C+SN NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDEIY
Sbjct: 7 LQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIY 66
Query: 406 NDL 414
+L
Sbjct: 67 KEL 69
Score = 34.3 bits (75), Expect = 3.6
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 435 YTQNGLLHMLDRNRRIK 485
YT NGLL MLDRNRRIK
Sbjct: 77 YTANGLLKMLDRNRRIK 93
>UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n=1;
Bos taurus|Rep: UPI0000F31DDA UniRef100 entry - Bos
Taurus
Length = 218
Score = 83.8 bits (198), Expect = 5e-15
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 232 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 411
VAVVC SNMNRSMEAH L +KGF V+S+G G +V+LPG + + P Y F Y+E+ D
Sbjct: 11 VAVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYNFSTTYEEMRKD 70
Query: 412 LMEKXKITTLKMDCYIC*TGIEE*SXXR--KFQVCNERFDVI 531
L+ K + + + G E R +FQ C + FDVI
Sbjct: 71 LVRKDR-QRYNSNGILHILGRNERIKPRPERFQECRDHFDVI 111
>UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1;
Encephalitozoon cuniculi|Rep: SSU72 PROTEIN HOMOLOG -
Encephalitozoon cuniculi
Length = 193
Score = 83.0 bits (196), Expect = 8e-15
Identities = 36/69 (52%), Positives = 46/69 (66%)
Frame = +1
Query: 217 MXXLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYD 396
M + +AV C+ N NRSM+ H L KKG VKS+GT +KLPG + D+PN Y FGV Y
Sbjct: 1 MPLMKLAVTCAMNQNRSMQTHDLLAKKGIPVKSFGTNPVIKLPGETMDKPNVYNFGVTYQ 60
Query: 397 EIYNDLMEK 423
+IY+DL K
Sbjct: 61 QIYDDLCMK 69
>UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=4; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 223
Score = 82.6 bits (195), Expect = 1e-14
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L + VC++N NRSME+H L G+NV+S+GTG V+LPG D+PN YEFG YD+IY
Sbjct: 6 LKICTVCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPLVDKPNVYEFGTPYDDIY 65
Query: 406 NDL 414
DL
Sbjct: 66 RDL 68
>UniRef50_Q00U02 Cluster: Protein involved in transcription start
site selection; n=2; Ostreococcus|Rep: Protein involved
in transcription start site selection - Ostreococcus
tauri
Length = 205
Score = 80.6 bits (190), Expect = 4e-14
Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +1
Query: 235 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEF-GVLYDEIYND 411
A VC++N NRSMEAH L++ GF+VKSYG +VKLPGAS D PN Y+F G Y+EI D
Sbjct: 13 ACVCAANFNRSMEAHRVLLENGFDVKSYGAASRVKLPGASRDDPNVYDFDGTSYEEILRD 72
Query: 412 L 414
L
Sbjct: 73 L 73
>UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog; n=3;
Laurasiatheria|Rep: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog - Canis familiaris
Length = 246
Score = 80.2 bits (189), Expect = 6e-14
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSNMNRSMEAH L K+GF V+S+G +VKLPG + P Y+F Y ++Y
Sbjct: 31 LRVAVVCSSNMNRSMEAHDILQKRGFCVRSFGVARQVKLPGLIRNCPVLYDFSTTYKQMY 90
Query: 406 NDLMEKXKITTLKMDCYIC*TGIEE--*SXXRKFQVCNERFDVI 531
DL K + + + G + +FQ C++ FDVI
Sbjct: 91 KDLWRKNR-ECYSSNGILQLLGRNQRIKPHPERFQECSDPFDVI 133
>UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 214
Score = 74.5 bits (175), Expect = 3e-12
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 232 VAVVCSSNMNRSMEAHAFLVKKGF-NVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYN 408
+A+VC+SN NRS+EAH VK GF N++S+GT KLPG S +PN + FG Y EIY
Sbjct: 24 IAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYT 83
Query: 409 DL 414
L
Sbjct: 84 SL 85
>UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1;
Trichomonas vaginalis G3|Rep: SSU72 protein-related
protein - Trichomonas vaginalis G3
Length = 204
Score = 67.7 bits (158), Expect = 3e-10
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L A VC+SN+NRSME H L + GFNV SYGT + VK+PGAS + P ++FG Y EI
Sbjct: 7 LAFACVCASNVNRSMEGHRVLKEAGFNVSSYGTNDYVKMPGAS-NVPLQFDFGATYKEIL 65
Query: 406 NDL 414
+ +
Sbjct: 66 SKM 68
>UniRef50_UPI00004982BE Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 201
Score = 61.7 bits (143), Expect = 2e-08
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +1
Query: 232 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 411
+AV+C SN NRS+ AH L + G+NV S+GTG LPGA+ R ++FG+ Y +I N
Sbjct: 15 IAVICRSNQNRSISAHCRLKQLGYNVSSFGTGVYTILPGAT--RNFGFQFGIPYKDIKNS 72
Query: 412 LMEKXKITTL--KMDCY-IC*TGIEE*SXXRKFQVCNERFDVII 534
L + K Y + S KFQ C + F++II
Sbjct: 73 LPKDEASVEYYRKNKIYQMLDRNANLKSAPEKFQDCKKEFNIII 116
>UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=16; Pezizomycotina|Rep: RNA
polymerase II subunit A C-terminal domain phosphatase
ssu72 - Aspergillus fumigatus (Sartorya fumigata)
Length = 287
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFL--VKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVL-YD 396
L VC+SN NRSMEAH L F V S+GTG V+LPG S +PN Y F Y
Sbjct: 53 LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS 112
Query: 397 EIYNDLMEK 423
++Y++L+ K
Sbjct: 113 QMYDELLAK 121
>UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein
MAL7P1.142; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein MAL7P1.142 - Plasmodium
falciparum (isolate 3D7)
Length = 418
Score = 35.9 bits (79), Expect = 1.2
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = -2
Query: 570 HSITDHILFLHNYYDIKSFITHLKFSXXALFFYSCLTYVTVHFECSNFXFFHKIIVNLIV 391
HS T + H++ I FI+ F L+++ HF S+F FH + ++ I+
Sbjct: 183 HSFTSSFILFHSFTFIIHFISFFYVHHSYYFILLRLSFILFHFFTSSFILFHSLTLSFIL 242
Query: 390 *NT---KFVTIRPICRGSR*FDFFASSIRFHIKTLFYEKRVSFHATI 259
++ F+ + F F I HI + FY R+ + ++
Sbjct: 243 FHSLTLSFILFHSLTLSFILFHSFTFII--HIISFFYFYRLFYFISL 287
>UniRef50_Q98RV2 Cluster: Putative uncharacterized protein orf590;
n=1; Guillardia theta|Rep: Putative uncharacterized
protein orf590 - Guillardia theta (Cryptomonas phi)
Length = 590
Score = 34.3 bits (75), Expect = 3.6
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = -2
Query: 558 DHILFLHNYYDIKSFITHLKFSXXALFFYSCLTYVTVHFECSNFXFFHKIIVNLIV*NTK 379
DH + L +YY K++ + KF+ FF S ++ +H C N F+ + + +++ N K
Sbjct: 335 DHFIRLLSYYFSKNYSIYYKFTNLKPFF-SPFLFLKIHNFCYNDCMFYNLNLCVVLKNEK 393
Query: 378 FVTI 367
+ +
Sbjct: 394 IIKL 397
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,789,834
Number of Sequences: 1657284
Number of extensions: 6603467
Number of successful extensions: 11956
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11942
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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