Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H02
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    85   1e-17
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.77 

>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 36/63 (57%), Positives = 46/63 (73%)
 Frame = +1

Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
           L ++V+C+SN NRSMEAH  L   G+ V S+GTG  V+LPG S D+PN Y+FG  YDEIY
Sbjct: 7   LQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIY 66

Query: 406 NDL 414
            +L
Sbjct: 67  KEL 69



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 435 YTQNGLLHMLDRNRRIK 485
           YT NGLL MLDRNRRIK
Sbjct: 77  YTANGLLKMLDRNRRIK 93


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 576 PNHSITDHILFLHNYYDIKSFITHLKFSXXALFFYSCLT--YVTVHFECSNFXFFHK 412
           P+  +T  + FL  +Y++ + + HL+FS   +   + L+  Y+T+ F      F+ K
Sbjct: 806 PSGKLTFELAFLEIFYELFNCLLHLQFSKYLVIIGTLLSDKYMTLGFSGKAHLFYTK 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,401
Number of Sequences: 5004
Number of extensions: 30198
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)