Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_H02
(805 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II... 100 5e-21
AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II... 100 5e-21
AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II... 100 5e-21
AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens ... 100 5e-21
AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein pr... 100 5e-21
AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein. 100 5e-21
AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II... 98 4e-20
AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens ... 98 4e-20
>BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 162
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 45.6 bits (103), Expect = 2e-04
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ*LNG 572
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ + G
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEG 122
>AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens
cDNA FLJ10947 fis, clone PLACE1000066, weakly similar to
SSU72 PROTEIN. ).
Length = 194
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein
protein.
Length = 194
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein.
Length = 194
Score = 100 bits (240), Expect = 5e-21
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK-ITTLKMDCYIC*TGIEE*SXXRKFQVCNERFDVII 534
NDL+ K K + T ++ +FQ C + FD+I+
Sbjct: 66 NDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLIL 109
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KRXNYYTQNGLLHMLDRNRRIKX-VQKISGV**KI*CHNNCEERVYDQ 560
K YTQNG+LHMLDRN+RIK ++ CEERVYDQ
Sbjct: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQ 118
>AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 153
Score = 97.9 bits (233), Expect = 4e-20
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK 429
NDL+ K K
Sbjct: 66 NDLLRKDK 73
>AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens
cDNA FLJ13048 fis, clone NT2RP3001399, weakly similar to
SSU72 PROTEIN. ).
Length = 153
Score = 97.9 bits (233), Expect = 4e-20
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +1
Query: 226 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 405
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMY 65
Query: 406 NDLMEKXK 429
NDL+ K K
Sbjct: 66 NDLLRKDK 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,271,775
Number of Sequences: 237096
Number of extensions: 1012306
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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