Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_G16
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.16
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.16
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.16
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 4.5
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 4.5
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 4.5
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 4.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 7.9
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 7.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 7.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 7.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPPG P PP GFK PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/82 (28%), Positives = 24/82 (29%)
Frame = +2
Query: 197 PXXLLVLKXPPXPXGXPFGEKXKKKXXSPLXPPKKXPPXGGKXXXXXXXXXXXXXXXXXX 376
P L + P P P G P PP PP G
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP- 774
Query: 377 XKNPPPXGXXGGPPPPXXXXFF 442
PPP G GGPPPP F
Sbjct: 775 ---PPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPPG P PP GFK PPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/82 (28%), Positives = 24/82 (29%)
Frame = +2
Query: 197 PXXLLVLKXPPXPXGXPFGEKXKKKXXSPLXPPKKXPPXGGKXXXXXXXXXXXXXXXXXX 376
P L + P P P G P PP PP G
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP- 774
Query: 377 XKNPPPXGXXGGPPPPXXXXFF 442
PPP G GGPPPP F
Sbjct: 775 ---PPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPPG P PP GFK PPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPP 369
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/82 (28%), Positives = 24/82 (29%)
Frame = +2
Query: 197 PXXLLVLKXPPXPXGXPFGEKXKKKXXSPLXPPKKXPPXGGKXXXXXXXXXXXXXXXXXX 376
P L + P P P G P PP PP G
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP- 357
Query: 377 XKNPPPXGXXGGPPPPXXXXFF 442
PPP G GGPPPP F
Sbjct: 358 ---PPPGGFKGGPPPPPPPGMF 376
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 154 FXPPPPGYXXPLVXPPXXVGFKXPPPP 234
F PPPPG PP G PPPP
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPP 99
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPP + + PP +G PPPP
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPPPP 109
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPP + PP G PPPP
Sbjct: 95 PPPPPMMGGIPPPPPMFGAPPPPPP 119
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 854 GGGGGGXXXXXGXGXXXGXXXXPPPXXRG 768
GGGGGG G G G PPP G
Sbjct: 28 GGGGGGCGGGCGGGCGGGGGCAPPPAPCG 56
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 854 GGGGGGXXXXXGXGXXXGXXXXPPPXXRG 768
GGGGGG G G G PPP G
Sbjct: 28 GGGGGGCGGGCGGGCGGGGGCAPPPAPCG 56
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 139 SKKXXFXPPPPGYXXPLVXPPXXVGFKXPP 228
SK F PPP GY PL P F+ P
Sbjct: 733 SKLPYFIPPPQGYVGPLPPAPPPPTFRVAP 762
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPPXG 240
PPPP PL PP G PPPP G
Sbjct: 772 PPPPPSAIPL--PPRLQGGIPPPPPLG 796
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 855 GGXGXGXXXXXGXXXXXGXXXXPPPPPP 772
GG G G G G PPPPPP
Sbjct: 45 GGCGYGGGGGCGYGGGYGCGIPPPPPPP 72
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPPXG 240
PPPP PL PP G PPPP G
Sbjct: 772 PPPPPSAIPL--PPRLQGGIPPPPPLG 796
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 162 PPPXLXAXFGXXPXXCWF*KXPPXXXXDPLGKKXKKXXXPPCXPPKXPPPXG 317
PPP FG P PP P+G PP PP PPP G
Sbjct: 612 PPPPPPQSFGMAPISSA--APPPPPPPPPMGLPAVGAGAPPPPPP--PPPSG 659
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPP P+ P G PPPP
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPP 654
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 162 PPPXLXAXFGXXPXXCWF*KXPPXXXXDPLGKKXKKXXXPPCXPPKXPPPXG 317
PPP FG P PP P+G PP PP PPP G
Sbjct: 438 PPPPPPQSFGMAPISSA--APPPPPPPPPMGLPAVGAGAPPPPPP--PPPSG 485
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 160 PPPPGYXXPLVXPPXXVGFKXPPPP 234
PPPP P+ P G PPPP
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPP 480
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 423 GGGGPPXXPXGGG 385
GGGGPP P GGG
Sbjct: 623 GGGGPPRGPGGGG 635
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 423 GGGGPPXXPXGGG 385
GGGGPP P GGG
Sbjct: 623 GGGGPPRGPGGGG 635
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,207
Number of Sequences: 27780
Number of extensions: 270591
Number of successful extensions: 2816
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -