Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G14
         (1070 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.093
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.66 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.8  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect(2) = 0.093
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 300 PPPPPPPXP 326
           PPPPPPP P
Sbjct: 306 PPPPPPPPP 314



 Score = 25.0 bits (52), Expect(2) = 0.093
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 288 GXXXPPPPPPP 320
           G   PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 301 PXPPPPPXP 327
           P PPPPP P
Sbjct: 306 PPPPPPPPP 314



 Score = 21.8 bits (44), Expect(2) = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 289 GXXXPXPPPPP 321
           G   P PPPPP
Sbjct: 303 GGLPPPPPPPP 313


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.66
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 303 PPPPPPXPG 329
           PPPPPP PG
Sbjct: 9   PPPPPPPPG 17



 Score = 22.2 bits (45), Expect(2) = 0.66
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 288 GXXXPPPPPP 317
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 766 PPPPXXXXXXGXPPXPPXP 710
           PPPP      G PP PP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 300 PPPPPPPXP 326
           PPPPPPP P
Sbjct: 775 PPPPPPPPP 783



 Score = 25.8 bits (54), Expect(2) = 1.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 303 PPPPPPXPG 329
           PPPPPP PG
Sbjct: 761 PPPPPPPPG 769



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 300 PPPPPP 317
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 246 PPPXIXLXKXXXXXGXXXPPPPPPP 320
           PPP   +           PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 300 PPPPPPPXP 326
           PPPPPPP P
Sbjct: 945 PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 301 PXPPPPPXPV 330
           P PPPPP P+
Sbjct: 945 PPPPPPPPPL 954



 Score = 21.0 bits (42), Expect(2) = 6.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 289 GXXXPXPPPPPXP 327
           G     PPPPP P
Sbjct: 939 GVMPAFPPPPPPP 951


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 300 PPPPPPPXP 326
           PPPPPPP P
Sbjct: 189 PPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,835
Number of Sequences: 5004
Number of extensions: 14056
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 561795324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)