Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G13
         (1320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       30   4.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   6.2  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 25/99 (25%), Positives = 25/99 (25%)
 Frame = +1

Query: 727  PPPXTXXXTXXSXAXXLXPXXXLPPLSXXLXXPLXGXPPLRHKXXXXPPPALYXLXXXXS 906
            PPP             L P    PP       P    PP        PP           
Sbjct: 234  PPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPP---IFSPPSPP 290

Query: 907  XXXPPXXXXPNIXYPPTPXFGXXPXXAPSARXXXXPAPP 1023
               PP    P    PP P F   P   PS      P PP
Sbjct: 291  PPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPP 329


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
 Frame = +1

Query: 781  PXXXLPPLSXXLXXPLXGXPPLRHKXXXXPPPAL---YXLXXXXSXXXPPXXXXPNIXYP 951
            P   LPP +          PP  H     PPP                PP    P    P
Sbjct: 304  PPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRP 363

Query: 952  PTPXFGXXPXXAPSARXXXXPAPP 1023
            P P  G  P    + R    P PP
Sbjct: 364  PGPGPGPPPPPGAAGRGGGGPPPP 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,337
Number of Sequences: 37544
Number of extensions: 194954
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4132076460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)