Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G13
         (1320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   3.2  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    29   7.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/67 (32%), Positives = 23/67 (34%)
 Frame = +1

Query: 823  PLXGXPPLRHKXXXXPPPALYXLXXXXSXXXPPXXXXPNIXYPPTPXFGXXPXXAPSARX 1002
            P  G PPL       PPPA        +   PP    P    PP P  G  P   P  R 
Sbjct: 242  PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP----PPTGSPPPPPAGGSP---PPPRA 294

Query: 1003 XXXPAPP 1023
               P PP
Sbjct: 295  GSPPPPP 301


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/67 (32%), Positives = 23/67 (34%)
 Frame = +1

Query: 823  PLXGXPPLRHKXXXXPPPALYXLXXXXSXXXPPXXXXPNIXYPPTPXFGXXPXXAPSARX 1002
            P  G PPL       PPPA        +   PP    P    PP P  G  P   P  R 
Sbjct: 263  PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP----PPTGSPPPPPAGGSP---PPPRA 315

Query: 1003 XXXPAPP 1023
               P PP
Sbjct: 316  GSPPPPP 322


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/67 (32%), Positives = 23/67 (34%)
 Frame = +1

Query: 823  PLXGXPPLRHKXXXXPPPALYXLXXXXSXXXPPXXXXPNIXYPPTPXFGXXPXXAPSARX 1002
            P  G PPL       PPPA        +   PP    P    PP P  G  P   P  R 
Sbjct: 248  PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP----PPTGSPPPPPAGGSP---PPPRA 300

Query: 1003 XXXPAPP 1023
               P PP
Sbjct: 301  GSPPPPP 307


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
 Frame = +1

Query: 775  LXPXXXLPPLSXXLXXPLXGX--PPLRHKXXXXPPPALYXLXXXXSXXXPPXXXXPNIXY 948
            L P   +P  S  +  P+     PP        PPP ++          PP      I  
Sbjct: 52   LPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFA-----GGIPPPPPMMGGIP- 105

Query: 949  PPTPXFGXXPXXAPSARXXXXPAPP 1023
            PP P FG  P   P +     P PP
Sbjct: 106  PPPPMFGAPPPPPPPSGLGVAPQPP 130


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
            domain-containing protein2 protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 919  PXXXXPNIXYPPTPXFGXXPXXAPSARXXXXPAPP 1023
            P    P +  PP P  G  P  AP       P PP
Sbjct: 2    PATPVPPVTMPPVPPVGFPPVTAPPGLHPPPPVPP 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,521
Number of Sequences: 27780
Number of extensions: 106918
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3694370690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)