Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G10
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.2  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 614 GXPPPPPPPXXXXXXXPPPPXGGXKXXXGGG 522
           G PPPPPPP       PPPP         GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPPPPXG 549
           P PPP P       PPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -3

Query: 605 PPPPPPXXXXXXXPPPPXGGXKXXXGGGGGXF 510
           PPPPPP        PPP          GG  +
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 673 PPPPXXGXXXXXSPPPP 723
           PPPP  G      PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPPPP 555
           PPPPPPP       PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 614 GXPPPPPPPXXXXXXXPPPP 555
           G PPPPPPP        PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPPPPXGG 546
           PPPPPP        PPPP  G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 655 PXXXXXPPPPXXGXXXXXSPPPP 723
           P     PPPP  G      PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPP 561
           PPPPPPP       PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPPPPXG 549
           PPPPPP        P PP G
Sbjct: 338 PPPPPPRSNAAGSIPLPPQG 357


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +1

Query: 517 PPPPPXXFXXPPXGGG--GXXXXXXXGGGGGGG 609
           PPPP      P  GGG  G       G GG GG
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGG 131


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 614 GXPPPPPPP 588
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 608 PPPPPPPXXXXXXXPPPP 555
           PPPPPP        P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.150    0.501 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,754
Number of Sequences: 5004
Number of extensions: 24771
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)