Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G06
         (1070 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.38 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 922  PXSRXQYXQPPPXVPXXXPRPPTXPSVACXLTPXAPXXPPPPXPXP 1059
            P    Q  QP    P   P P   P      +P  P   PPP   P
Sbjct: 7    PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 807 PASAXXXPXRAPSDXPLLXPLFXHXVPPXPPXXPPPXTP 923
           P+S    P  +P   P          PP P   PPP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQ---RGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 763 APXXPXNXFXPXXPPPPPPSXXP 831
           +P  P     P  PP  PPS  P
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 793 PXXPPPPPPSXXP 831
           P  PPPPP S  P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 1015 TPXAPXXPPPPXPXPAP 1065
            TP  P  PPPP     P
Sbjct: 337  TPPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 802  PPPPPPS 822
            PPPPPPS
Sbjct: 1357 PPPPPPS 1363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,780
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35788797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)