Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_G03
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 259 3e-70
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 155 1e-38
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 154 1e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 106 5e-24
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 1e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 4e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 59 9e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 5e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.88
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.5
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 4.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 259 bits (635), Expect = 3e-70
Identities = 137/221 (61%), Positives = 154/221 (69%)
Frame = +1
Query: 199 LVVANGSGMCKAGFAGAXAPRAVFPSXRGKAPPSGX*WSVWDRRTLM*EMRHRAKXXXXX 378
LV+ NGSGMCKAGFAG APRAVFPS G+ G + + + + + ++K
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGD-EAQSKRGILT 66
Query: 379 XXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQIMFET 558
+ P P LLTEAPLNPK+NREKMTQI+FET
Sbjct: 67 LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFET 126
Query: 559 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 738
FN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLT
Sbjct: 127 FNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 186
Query: 739 DYLMKILTERGYSFTXTXEREIVRDIKEKLCYVALXFXQEM 861
DYLMKIL ERGY+F+ T EREIVRDIKEKLCYVAL F QE+
Sbjct: 187 DYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQEL 227
Score = 136 bits (328), Expect = 5e-33
Identities = 59/65 (90%), Positives = 60/65 (92%)
Frame = +3
Query: 291 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 470
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 471 PEEHP 485
PEEHP
Sbjct: 98 PEEHP 102
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 269 FPRIVGRPRHQG 304
FP IVGRPRH G
Sbjct: 31 FPSIVGRPRHHG 42
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 155 bits (375), Expect = 1e-38
Identities = 71/123 (57%), Positives = 91/123 (73%)
Frame = +1
Query: 472 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 651
PR LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 652 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTXTXEREIVRDIKEKLC 831
GV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F T + E VR++KEKLC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 832 YVA 840
YV+
Sbjct: 218 YVS 220
Score = 59.7 bits (138), Expect = 5e-10
Identities = 21/49 (42%), Positives = 39/49 (79%)
Frame = +3
Query: 327 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 473
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 199 LVVANGSGMCKAGFAGAXAPRAVFPSXRGK 288
+V+ NG+G K G+A PR FPS G+
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 154 bits (374), Expect = 1e-38
Identities = 83/221 (37%), Positives = 120/221 (54%)
Frame = +1
Query: 199 LVVANGSGMCKAGFAGAXAPRAVFPSXRGKAPPSGX*WSVWDRRTLM*EMRHRAKXXXXX 378
+ + NGSG KAGFAG P+ +FP+ G+ S + + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 379 XXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQIMFET 558
+ I S + P P LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 559 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 738
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 739 DYLMKILTERGYSFTXTXEREIVRDIKEKLCYVALXFXQEM 861
DYL L + G+ + E+EIVR+IKEK CYVA F E+
Sbjct: 192 DYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
Score = 70.5 bits (165), Expect = 3e-13
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 306 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 482
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 483 P 485
P
Sbjct: 107 P 107
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 106 bits (254), Expect = 5e-24
Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 10/139 (7%)
Frame = +1
Query: 472 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------T 627
P + LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 628 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTXTXERE 801
G V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S T ER
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER- 239
Query: 802 IVRDIKEKLCYVALXFXQE 858
IKE+ CYV +E
Sbjct: 240 ----IKEECCYVCPDIVKE 254
Score = 53.6 bits (123), Expect = 4e-08
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 330 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 482
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 199 LVVANGSGMCKAGFAGAXAPRAVFPS 276
+++ NG+G K G+AG AP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 1e-10
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +1
Query: 484 PXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGV 657
P +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAA 176
Query: 658 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 780
SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 177 SHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
Score = 33.5 bits (73), Expect = 0.041
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 318 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 485
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHP 117
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 163 SFKSVAPXXLPRLVVANGSGMCKAGFAGAXAPRAVF 270
SF++V+ +P LV+ NGS +AG+ G P+ VF
Sbjct: 17 SFQNVS-NDIP-LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.1 bits (144), Expect = 1e-10
Identities = 33/101 (32%), Positives = 50/101 (49%)
Frame = +1
Query: 472 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 651
P P L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 96 PLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGA 155
Query: 652 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 774
S IY+G+ L +G + D L + L ++ +
Sbjct: 156 ERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
Score = 33.5 bits (73), Expect = 0.041
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 372 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 485
+ +K I +G V NWD +W + +L+ P EHP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 60.1 bits (139), Expect = 4e-10
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 1/198 (0%)
Frame = +1
Query: 190 LPRLVVANGSGMCKAGFAGAXAPRAVFPSXRG-KAPPSGX*WSVWDRRTLM*EMRHRAKX 366
+P LV+ GS + G+AG +P + PS G ++ +G V D L
Sbjct: 10 IPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDE--LQIHAPIPGME 67
Query: 367 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQI 546
T TW R G+ V+P ++TE NP++ R+++ +
Sbjct: 68 VKNGKSNGIIQDWESTLYTWER-GLKEKLQ--VNPTEYA-MMITEPSWNPQSVRQQIMEA 123
Query: 547 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 726
FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG
Sbjct: 124 AFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
Query: 727 RDLTDYLMKILTERGYSF 780
L + ++ F
Sbjct: 184 DFLNANIEQLFNTMNIEF 201
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 291 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 464
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 465 VAPEEHPXPAY*GSPQPQGQQRE 533
V P E+ S PQ +++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQ 119
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.8 bits (136), Expect = 9e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Frame = +1
Query: 631 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTXTXEREIVR 810
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 811 DIKEKLCYVALXFXQEM 861
+IKE +CYV+ F ++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 5e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +1
Query: 523 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 702
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 703 ILRLDLAGRDLTDYLMKILTE 765
+L L GR +T +L +L E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRE 241
Score = 25.8 bits (54), Expect = 8.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 387 PIEHGIVTNWDDMEKIWHHTF 449
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/84 (20%), Positives = 42/84 (50%)
Frame = +1
Query: 529 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 708
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 709 RLDLAGRDLTDYLMKILTERGYSF 780
+++ G D+T MK+L + +
Sbjct: 320 KINYGGDDITLLFMKLLMRSHFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 572 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 706
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 569 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 706
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 569 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 706
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 569 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 706
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 560 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 706
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 175 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 560 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 706
ST P T S S P VPP S T + PT ST +P P+
Sbjct: 118 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 560 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 706
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 593 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 697
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 593 PCSRCTRPVVPPVSCWTPATVSPTPCPST 679
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 569 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 676
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +1
Query: 412 TGMTWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 591
T +TW+ G P +S + N P L + L K T E P + AI+
Sbjct: 413 TNVTWKDAGYNPELLSINTITDNKPVLHVQEDLCKWWKESKGT--TSEATVAPTIQEAIE 470
Query: 592 AVLSLYASGRTT 627
V+S+ R T
Sbjct: 471 TVMSIKQKSRNT 482
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 490 LLTEAPLNPKANREKMTQIMFETFN 564
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 575 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 718
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,701
Number of Sequences: 5004
Number of extensions: 61058
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -