Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G02
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    84   2e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    83   6e-17
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    79   8e-16
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.9  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 37/66 (56%), Positives = 54/66 (81%)
 Frame = +2

Query: 134 LAASXLAVLGGKPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLS 313
           LAA  L  +GGK  P+A+D+E +LS+VGIEA++E ++ +I ELNGKD+++LIAAG EKL+
Sbjct: 4   LAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLA 63

Query: 314 SMPVGG 331
           ++P GG
Sbjct: 64  TVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 38/66 (57%), Positives = 54/66 (81%)
 Frame = +2

Query: 134 LAASXLAVLGGKPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLS 313
           LAA  L  +GGK  P+A+D+E +LS+VGIEA+AE ++ +I+ELNGK++E+LIAAG EKLS
Sbjct: 4   LAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLS 63

Query: 314 SMPVGG 331
           ++P  G
Sbjct: 64  TVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 35/66 (53%), Positives = 54/66 (81%)
 Frame = +2

Query: 134 LAASXLAVLGGKPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLS 313
           LAA  L  +GGK  P+A+D+E +LS+VGIE+++E ++ +I EL+GKD+++LIAAG EKL+
Sbjct: 4   LAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLA 63

Query: 314 SMPVGG 331
           ++P GG
Sbjct: 64  TVPSGG 69


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 155 VLGGKPPPAAADVEQLLSSVGIEADAEXLKXVITELNGKDVEQLIAAGREKLSSM 319
           V+  +PP + ++ EQ+L SV   +D      +IT  N + V++L++  R  L  +
Sbjct: 740 VIPMRPPSSLSEFEQILKSVLYVSDEGGKDQIITCWNQR-VDELLSDTRSHLHKL 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,594
Number of Sequences: 5004
Number of extensions: 16159
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)