Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_G01
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0670 - 18544745-18545119,18545319-18545551,18546377-185464...    31   1.6  
01_07_0206 + 41990251-41992032,41992131-41992361                       30   2.1  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    30   2.8  
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848     29   6.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.5  

>04_03_0670 -
           18544745-18545119,18545319-18545551,18546377-18546476,
           18546842-18546910,18547822-18547900,18547989-18548224
          Length = 363

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 313 TERSSMMTAAN*PGRPTAPGSWDLQGDSTNYGGRLD 420
           T R   +T A    RP A  S  LQG++T  GGR+D
Sbjct: 313 TARGPDLTTAAPETRPRAAPSHGLQGEATESGGRMD 348


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +3

Query: 150 RSXFLGRSXAGSPIXGXFSKRHPRXVTWXKQVGG-----GKVFGTLGQNDDGLFGKAGYN 314
           R  F      G P+    S+R  R   W +Q+GG      +++G     D  L     +N
Sbjct: 212 RMGFYQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFN 269

Query: 315 REIFNDDRGKLTGQAYGTRVLGPAGGQYKLRWTSRL 422
           R+  N D+  L+ QA  + +     GQ+K  W  R+
Sbjct: 270 RQYVNMDKTWLSKQAEMSTL---QLGQWKPSWRHRI 302


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 289 GFLVKPVTTERSSM-MTAAN*PGRPTAPG--SWDLQGDSTNYGGRLDWANKNAEAAIDIN 459
           GFLV         + +++ N PG PT+PG  S++ QG +T  G +  W+++    + +  
Sbjct: 155 GFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQG-ATVVGYQQGWSSERVALSSNGQ 213

Query: 460 RQIGGRSGMTATGSG 504
           R+  G S +    +G
Sbjct: 214 RRHSGNSMVLPHNTG 228


>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
          Length = 345

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 358 PTAPGSWDLQGDS 396
           PT PG+WD++GDS
Sbjct: 229 PTMPGTWDMKGDS 241


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 394  STNYGGRLDWANKNAEAAIDINRQI 468
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,318
Number of Sequences: 37544
Number of extensions: 276113
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)