Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F19
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   257   1e-69
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   257   2e-69
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    55   1e-08
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.84 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   4.5  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  257 bits (630), Expect = 1e-69
 Identities = 118/156 (75%), Positives = 138/156 (88%)
 Frame = +3

Query: 189 EKARLXQALKLIGAYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 368
           E ARL   LKL G YGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA++RR
Sbjct: 20  ESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRR 79

Query: 369 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 548
           LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80  LVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139

Query: 549 VVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGTCQEE 656
           +VN+PSF+VRLD+ KHIDF+L SP+GGGRPG C+ +
Sbjct: 140 IVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRK 175


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  257 bits (629), Expect = 2e-69
 Identities = 118/156 (75%), Positives = 138/156 (88%)
 Frame = +3

Query: 189 EKARLXQALKLIGAYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 368
           E ARL   LKL G YGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA++RR
Sbjct: 20  ESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRR 79

Query: 369 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 548
           LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80  LVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139

Query: 549 VVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGTCQEE 656
           +VN+PSF+VRLD+ KHIDF+L SP+GGGRPG C+ +
Sbjct: 140 IVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRK 175


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 32/115 (27%), Positives = 52/115 (45%)
 Frame = +3

Query: 231 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 410
           Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+L  K    
Sbjct: 36  YHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMS 95

Query: 411 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
           D      +     RRL   + K  +++ +  A  LI Q H+RV   V+  P+++V
Sbjct: 96  DIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 431  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 562
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 402 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 533
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,242
Number of Sequences: 5004
Number of extensions: 49046
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)