Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F19
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   8.3  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 623 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTINIYN 733
           ++R +W   SR RT  R+R  EP ++     KTI+  N
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIHNNN 94


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 623 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTINIYN 733
           ++R +W   SR RT  R+R  EP ++     KTI+  N
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIHNNN 94


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 623 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTINIYN 733
           ++R +W   SR RT  R+R  EP ++     KTI+  N
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIHNNN 94


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 630 GRPGTCQEEEPPQGT 674
           G+PG C   +P +GT
Sbjct: 495 GKPGLCDAMKPTKGT 509


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 623 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTINIYN 733
           ++R +W   SR RT  R+R  EP ++     +TI+  N
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNRTIHNNN 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,369
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)