Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F18
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   216   4e-57
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   216   4e-57
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   1.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.7  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  216 bits (527), Expect = 4e-57
 Identities = 100/149 (67%), Positives = 118/149 (79%)
 Frame = +2

Query: 167 PXPKLRXFDLGXQRAXVDXFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 346
           P  K+R FDLG +RA VD FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD FH
Sbjct: 27  PDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFH 86

Query: 347 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQXIMSVRSSDRWKA 526
           +R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A
Sbjct: 87  LRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRA 146

Query: 527 QVIEALRRAKFKFPDVKRSTYQRSGGFTK 613
             IEALRR ++KFP  +R    +  GF++
Sbjct: 147 TAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 88  LGRRPARCSRSCKNQPSPKSXFCRGVPXSQ 177
           + RRPARC R CKN+P PKS + R VP S+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSK 30



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 550 CQVQVPGRQKIYVSKKWGFHKSMNVMXFEKLREXGRL 660
           CQ + PG+Q+I VSKKWGF +       EK R  G +
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEK-RSRGEI 190


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  216 bits (527), Expect = 4e-57
 Identities = 100/149 (67%), Positives = 118/149 (79%)
 Frame = +2

Query: 167 PXPKLRXFDLGXQRAXVDXFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 346
           P  K+R FDLG +RA VD FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD FH
Sbjct: 27  PDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFH 86

Query: 347 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQXIMSVRSSDRWKA 526
           +R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A
Sbjct: 87  LRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRA 146

Query: 527 QVIEALRRAKFKFPDVKRSTYQRSGGFTK 613
             IEALRR ++KFP  +R    +  GF++
Sbjct: 147 TAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 88  LGRRPARCSRSCKNQPSPKSXFCRGVPXSQ 177
           + RRPARC R CKN+P PKS + R VP S+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSK 30



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 550 CQVQVPGRQKIYVSKKWGFHKSMNVMXFEKLREXGRL 660
           CQ + PG+Q+I VSKKWGF +       EK R  G +
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEK-RSRGEI 190


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 289  CLQSL*AQLFIFVGHQVHAQWKXVNVRALLTQIEXTELGXREHPDRTXISETV 131
            CL  L   L   + H++ ++W+ +N R LL + +  E G  +      I E++
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETGEDDDLSEEMIEESL 992


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 463  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 347
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,691
Number of Sequences: 5004
Number of extensions: 47940
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)