Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_F18
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 211 6e-55
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 207 1e-53
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 202 3e-52
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 30 2.1
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.1
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054... 30 2.1
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 4.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 211 bits (515), Expect = 6e-55
Identities = 98/149 (65%), Positives = 115/149 (77%)
Frame = +2
Query: 167 PXPKLRXFDLGXQRAXVDXFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 346
P PK+R +D+G ++ VD FP CVHLVS E E +SSEALEA RI CNKY+ KN GKD FH
Sbjct: 27 PDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFH 86
Query: 347 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQXIMSVRSSDRWKA 526
+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR +
Sbjct: 87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAK 146
Query: 527 QVIEALRRAKFKFPDVKRSTYQRSGGFTK 613
EALRRAKFKFP ++ + R GFTK
Sbjct: 147 HAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
Score = 48.8 bits (111), Expect = 6e-06
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1
Query: 88 LGRRPARCSRSCKNQPSPKSXFCRGVP 168
+GRRPARC R KN+P PKS +CRGVP
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVP 27
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 207 bits (505), Expect = 1e-53
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +2
Query: 167 PXPKLRXFDLGXQRAXVDXFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 346
P PK+R FD+G ++ D FPLCVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH
Sbjct: 334 PDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFH 393
Query: 347 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQXIMSVRSSDRWKA 526
+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A
Sbjct: 394 LRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAA 453
Query: 527 QVIEALRRAKFKFPDVKRSTYQRSGGFTK 613
EALRRAKFKFP +R + GFT+
Sbjct: 454 HAQEALRRAKFKFPGRQRVIFSAKWGFTR 482
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 100 PARCSRSCKNQPSPKSXFCRGVP 168
P RC R KN+P PKS +CRGVP
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVP 334
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 202 bits (493), Expect = 3e-52
Identities = 95/149 (63%), Positives = 112/149 (75%)
Frame = +2
Query: 167 PXPKLRXFDLGXQRAXVDXFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 346
P PK+R +D+G ++ VD F CVHLVS E E ++SEALEA RI CNKY+ K+ GKD FH
Sbjct: 23 PDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFH 82
Query: 347 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQXIMSVRSSDRWKA 526
+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 83 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAV 142
Query: 527 QVIEALRRAKFKFPDVKRSTYQRSGGFTK 613
EALRRAKFKFP ++ R GFTK
Sbjct: 143 HASEALRRAKFKFPGRQKIIESRKWGFTK 171
Score = 35.1 bits (77), Expect = 0.075
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 109 CSRSCKNQPSPKSXFCRGVP 168
C R KN+P PKS +CRGVP
Sbjct: 4 CYRQIKNKPYPKSRYCRGVP 23
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 218 DXFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 331
D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 589 DWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 492 MXCPMRTRATVP*GLPNAPRIPVWSLSAPAH 400
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>01_06_0474 +
29604201-29604527,29604634-29604988,29605071-29605411,
29606502-29606940,29607558-29607913
Length = 605
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +1
Query: 76 CXAPLGRRPARCSRSCKNQPSPKSXFCRGV-----PXSQAPXLRFGXAARXR*RLSTVRA 240
C AP R A SRSC +P+P + G+ P +Q P R + ++++RA
Sbjct: 397 CMAPSRRSMAVRSRSCSGRPTPSAHARNGIFRTPFPGTQKPGARPDATVKPA-AVASLRA 455
Query: 241 LGVRRI-*TAELRGFGGR 291
+ V + E RG GGR
Sbjct: 456 VPVVGVQCDVEDRGDGGR 473
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 480 LDXPSCPCALVTGGRHRSSRLCAVPSSSSRTSKDLRIKEV 599
L P P L GRH +R+ +S S DLR++E+
Sbjct: 207 LAMPESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,958
Number of Sequences: 37544
Number of extensions: 368325
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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