Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_F15
(776 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 3.5
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 3.5
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 3.5
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 3.5
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 3.5
BC064999-1|AAH64999.1| 1068|Homo sapiens DAAM1 protein protein. 30 8.1
BC038428-1|AAH38428.1| 1068|Homo sapiens DAAM1 protein protein. 30 8.1
BC024781-1|AAH24781.1| 662|Homo sapiens Similar to dishevelled ... 30 8.1
AB014566-1|BAA31641.1| 1085|Homo sapiens KIAA0666 protein protein. 30 8.1
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 406 PPPLFXXXXXGFXXPXXGALXXPPXPKXXXGXXXPPGGXPPLXGDXKKXXTSPPKXXXXP 227
PPP F P G L P P G PPG PP G PP+ P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPPPGPPPPQQGPPPPPGPFPPR---PP 328
Query: 226 XPWXXXXFLXXXPSXXNP 173
P L P P
Sbjct: 329 GPLGPPLTLAPPPHLPGP 346
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 406 PPPLFXXXXXGFXXPXXGALXXPPXPKXXXGXXXPPGGXPPLXGDXKKXXTSPPKXXXXP 227
PPP F P G L P P G PPG PP G PP+ P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPPPGPPPPQQGPPPPPGPFPPR---PP 328
Query: 226 XPWXXXXFLXXXPSXXNP 173
P L P P
Sbjct: 329 GPLGPPLTLAPPPHLPGP 346
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 406 PPPLFXXXXXGFXXPXXGALXXPPXPKXXXGXXXPPGGXPPLXGDXKKXXTSPPKXXXXP 227
PPP F P G L P P G PPG PP G PP+ P
Sbjct: 200 PPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPPPGPPPPQQGPPPPPGPFPPR---PP 255
Query: 226 XPWXXXXFLXXXPSXXNP 173
P L P P
Sbjct: 256 GPLGPPLTLAPPPHLPGP 273
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 406 PPPLFXXXXXGFXXPXXGALXXPPXPKXXXGXXXPPGGXPPLXGDXKKXXTSPPKXXXXP 227
PPP F P G L P P G PPG PP G PP+ P
Sbjct: 310 PPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPPPGPPPPQQGPPPPPGPFPPR---PP 365
Query: 226 XPWXXXXFLXXXPSXXNP 173
P L P P
Sbjct: 366 GPLGPPLTLAPPPHLPGP 383
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -2
Query: 406 PPPLFXXXXXGFXXPXXGALXXPPXPKXXXGXXXPPGGXPPLXGDXKKXXTSPPKXXXXP 227
PPP F P G L P P G PPG PP G PP+ P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPPPGPPPPQQGPPPPPGPFPPR---PP 328
Query: 226 XPWXXXXFLXXXPSXXNP 173
P L P P
Sbjct: 329 GPLGPPLTLAPPPHLPGP 346
>BC064999-1|AAH64999.1| 1068|Homo sapiens DAAM1 protein protein.
Length = 1068
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 364 PXXGALXXPPXPKXXXGXXXPPGGXPPL 281
P G + PP P G PP G PPL
Sbjct: 556 PLPGGMLPPPPPPLPPGGPPPPPGPPPL 583
>BC038428-1|AAH38428.1| 1068|Homo sapiens DAAM1 protein protein.
Length = 1068
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 364 PXXGALXXPPXPKXXXGXXXPPGGXPPL 281
P G + PP P G PP G PPL
Sbjct: 556 PLPGGMLPPPPPPLPPGGPPPPPGPPPL 583
>BC024781-1|AAH24781.1| 662|Homo sapiens Similar to dishevelled
associated activator of morphogenesis 2 protein.
Length = 662
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 364 PXXGALXXPPXPKXXXGXXXPPGGXPPL 281
P G + PP P G PP G PPL
Sbjct: 150 PLPGGMLPPPPPPLPPGGPPPPPGPPPL 177
>AB014566-1|BAA31641.1| 1085|Homo sapiens KIAA0666 protein protein.
Length = 1085
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 364 PXXGALXXPPXPKXXXGXXXPPGGXPPL 281
P G + PP P G PP G PPL
Sbjct: 563 PLPGGMLPPPPPPLPPGGPPPPPGPPPL 590
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,400,280
Number of Sequences: 237096
Number of extensions: 1078275
Number of successful extensions: 2023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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