Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F13
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.21 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   2.6  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 263 SIIQHVVNNLIIDKXRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 442
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 443 A 445
           A
Sbjct: 306 A 306


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 837 EDPATSPSCPTALRSPEAFTIVPSSKASLNW 745
           E+PAT+PS P  ++ P    I+ S+    NW
Sbjct: 77  EEPATTPSAP-PVQPPNDPAIIGSNSGQYNW 106


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 226 PSALGICAPRQGLHHPACS*QPDH*QXXEHHGVLLQAVGRQRTGNC*KV 372
           PSA+   A  +   HPACS      Q  E     +++  + R+G C KV
Sbjct: 39  PSAMQHYATLRNFTHPACSVNKQAEQGKEQQQYAMKSQFQFRSGICSKV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,538
Number of Sequences: 5004
Number of extensions: 49122
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)