Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F13
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   5.6  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   5.6  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   9.7  

>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 401 AGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKI 577
           A   +KII   Y++     S     NE  A  + +D  HT + + +FIT  ++N V F +
Sbjct: 57  ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112

Query: 578 HNTKYXQ 598
           +   Y Q
Sbjct: 113 NYPTYTQ 119


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
 Frame = +2

Query: 374 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 529
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG       + K++    
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376

Query: 530 WKFITLWENNR--VYFKIHNT 586
           W F  +   N   V F+ ++T
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 703 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQGRWTR 816
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 703 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQGRWTR 816
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 703 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQGRWTR 816
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 255 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 292


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 703 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQGRWTR 816
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 352 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 389


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 472 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVP 308
           G GCG + +S  +V   +N D D+   ++E +   EVL NN  S     LV+V   +P
Sbjct: 63  GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLP 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,935
Number of Sequences: 27780
Number of extensions: 292605
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)