Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F12
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.50 
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    28   1.5  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   4.7  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.7  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.1  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   8.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 470 SALSNS-HLRPNGRLRSSACIRGSTRAPVPSALNGASP 580
           SALS+S HL+P     SS+ +  S  AP P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 561 ADGTGARVLPRIHALLRSRPLGRRCEFDKADQSTVYNVVRRT 436
           ADG G  V+P    L+ + P   + +FD  D    +    RT
Sbjct: 14  ADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERT 55


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 427 DTNCPAYDIIHCALISFIKFASPSQW 504
           +TNC  Y +I+ A   + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 373 VQNFKTTCLSDSLKPQGVDTNCPAYDIIHCALISFIKFASP 495
           V NF    + DS+ P  +   CP Y I H    S   + SP
Sbjct: 272 VLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSP 312


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 256 KTRCIFKESGWAKNNVIDKKKVSDYFE 336
           KT  IFK++G+A  NV+D    S  F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +1

Query: 397 LSDSLKPQGVDTNCPAYDIIHCAL--ISFIKFASPSQWSTSEQCVYPRQYAGACPV--CP 564
           + + LK   VDT  P+ +    A   +SF+KF      +  +   Y    +   P   C 
Sbjct: 134 IPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKRLSRAPDQIMRYYHATSNEFPGLWCN 193

Query: 565 ERCFAPSVPNGSCNA 609
             C   S+PN +C A
Sbjct: 194 NECIPSSIPNCACGA 208


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 268 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 357
           IF+E G   +N+ D     DY    + DNP
Sbjct: 13  IFEEKGSTSSNISDNCASRDYDVNISSDNP 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,636
Number of Sequences: 5004
Number of extensions: 51984
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)