Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F08
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.87 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.7  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   2.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   8.1  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   8.1  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 533 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 643
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +2

Query: 131 FVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSXHLYEEXKSEVITNVVNKLIRNN 310
           F+   ++   ++ N  +E  L     V  + +  E++ H++ +  S   T + NKL+  +
Sbjct: 232 FIKVEFSLSGEISNAAIEWYLLEKSRVV-HQNEFERNYHVFYQLLSGADTALKNKLLLTD 290

Query: 311 KMNCMEYAYQLWLQGLQGTSSGIVSQFEFRLIFA 412
             NC +Y Y   L+       G+  + EF+ + A
Sbjct: 291 --NCNDYRY---LKDSVHIIDGVDDKEEFKTLLA 319


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 179 LEEQLYNSVVVADYDSAVE--KSXH--LYEEXKSEVITNVVNKLIRNNKMNCMEYAYQLW 346
           L E   +  V  D +S  E  K  H  + +  KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 518 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 634
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 ITNVVNKLIRNNKMNCMEYAYQLWLQGL 358
           +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 40  LTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 574 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIXAQRQSETVA 440
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,871
Number of Sequences: 5004
Number of extensions: 39950
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)