Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_F04
(869 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 162 9e-39
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 160 5e-38
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 118 1e-25
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 116 8e-25
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 109 7e-23
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 107 4e-22
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 107 4e-22
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 107 5e-22
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 106 6e-22
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 106 8e-22
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 103 6e-21
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 99 1e-19
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 98 2e-19
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 95 2e-18
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 91 3e-17
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 81 3e-14
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 78 3e-13
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 77 4e-13
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 77 6e-13
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 75 3e-12
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 71 5e-11
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 64 6e-09
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 61 3e-08
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 54 4e-06
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 54 5e-06
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 53 8e-06
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 48 4e-04
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 45 0.002
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 44 0.004
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 44 0.004
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 44 0.004
UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1; ... 40 0.062
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 38 0.33
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 37 0.58
UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 36 1.3
UniRef50_A6SMM1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.8
UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;... 35 2.3
UniRef50_Q5WBL2 Cluster: Nitrate/sulfonate/bicarbonate ABC trans... 35 3.1
UniRef50_Q0FXC5 Cluster: Cytochrome c family protein; n=1; Fulvi... 35 3.1
UniRef50_Q550Q3 Cluster: Putative uncharacterized protein; n=2; ... 35 3.1
UniRef50_Q8NIY2 Cluster: Related to acid proteinase; n=1; Neuros... 35 3.1
UniRef50_Q96XX4 Cluster: 217aa long hypothetical sulfocyanin; n=... 35 3.1
UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio rerio|... 34 4.1
UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2; ... 34 4.1
UniRef50_UPI0000F2E191 Cluster: PREDICTED: hypothetical protein;... 34 5.4
UniRef50_UPI000023E380 Cluster: hypothetical protein FG10835.1; ... 34 5.4
UniRef50_A0H7D7 Cluster: Cytochrome c, class I; n=4; Comamonadac... 34 5.4
UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole gen... 34 5.4
UniRef50_A6QT67 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 7.1
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 162 bits (394), Expect = 9e-39
Identities = 88/169 (52%), Positives = 103/169 (60%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VFKAPIRPD+VN+VH + +N+RQ Y VS+ AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 30 VFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHR 89
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
SGQG P + L + P+ + H
Sbjct: 90 SGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQS-KGHVID 148
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKG 728
FP V+D VQ++ KTKQAVIFLRRLK W+DI KVY SQR RAG+G
Sbjct: 149 GVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRG 197
Score = 56.4 bits (130), Expect = 9e-07
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCRGGRMFAPTK +RRWH Q++GH+I+ + E
Sbjct: 94 AFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSE 152
Score = 43.2 bits (97), Expect = 0.009
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +2
Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
+GPL+++ KD+GL +AFRNIPG+E
Sbjct: 208 RGPLVVYDKDEGLRKAFRNIPGIE 231
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 160 bits (388), Expect = 5e-38
Identities = 85/170 (50%), Positives = 104/170 (61%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VFKAPIRPD+VN VH ++ KN+RQPY VS+ AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 27 VFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHR 86
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
SGQG P + + + P+ + H +
Sbjct: 87 SGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMS-KGHRIE 145
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ P V D V+ KTK+AV+ L++LKAW+DI KVY SQR+RAGKGK
Sbjct: 146 EVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/59 (45%), Positives = 31/59 (52%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCRGGRMFAPTK WRRWH ++GH IE++PE
Sbjct: 91 AFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPE 149
Score = 37.1 bits (82), Expect = 0.58
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 758 KGPLIIFTKDQGLTRAFRNIPGV 826
+GP II+ +D G+ +AFRNIPG+
Sbjct: 205 RGPCIIYNEDNGIIKAFRNIPGI 227
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 118 bits (285), Expect = 1e-25
Identities = 79/179 (44%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF +PIRPD+V VH M+KN RQPY VS++AGHQTSAESWGTGRAVARIPRV GGGTHR
Sbjct: 26 VFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQTSAESWGTGRAVARIPRVSGGGTHR 85
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG------* 563
+GQ ++ R A R+ + LG R A SG
Sbjct: 86 AGQ------AAFGNMCRSGRMFAPTKVWRK-WHQKINLGQKRFATVSALAASGVPALLFA 138
Query: 564 RTHY*KDSRAFPWFVADXVQE---INKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
R H + P + V E I +T A L+ + A D+ KV S++LRAGKGK
Sbjct: 139 RGHQISEVAEVPLVINSEVFEGAKIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGK 197
Score = 53.6 bits (123), Expect = 6e-06
Identities = 25/59 (42%), Positives = 28/59 (47%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCR GRMFAPTK WR+WH ARGH I ++ E
Sbjct: 90 AFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSALAASGVPALLFARGHQISEVAE 148
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 116 bits (279), Expect = 8e-25
Identities = 52/64 (81%), Positives = 57/64 (89%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 144 VFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWGTGRAVARIPRVRGGGTHR 203
Query: 402 SGQG 413
SGQG
Sbjct: 204 SGQG 207
Score = 51.6 bits (118), Expect = 3e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWH 480
AFGNMCRGGRMFAPTK +RRWH
Sbjct: 208 AFGNMCRGGRMFAPTKVFRRWH 229
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 109 bits (263), Expect = 7e-23
Identities = 66/170 (38%), Positives = 85/170 (50%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF PIR DLV + +RQPY VSK AG Q SAESWGTGRA+AR+PRV+GGGT R
Sbjct: 24 VFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGGTRR 83
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
+GQG P + A T + + + S R H
Sbjct: 84 AGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQASLVEA-RGHRIS 142
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
D + P V+D + + KTK AV LR L ++ +V S+ +R GKGK
Sbjct: 143 DVKMLPIIVSDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGK 192
Score = 34.7 bits (76), Expect = 3.1
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKI 585
AF N CR GRM PTK RRW +ARGH I +
Sbjct: 88 AFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQASLVEARGHRISDV 144
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 107 bits (257), Expect = 4e-22
Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF APIR D+V+ V+ + SKN+RQP VS +AG Q SA SWGTGRAVARIPR+ G G+ R
Sbjct: 27 VFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQHSAISWGTGRAVARIPRISGSGSGR 86
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
+GQG P + + P+ S R H+
Sbjct: 87 NGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSA-RGHHIA 145
Query: 582 DSRAFPWFV-ADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P V + + I KTKQAV L+++ A+SD+LKV S+ +RAG+GK
Sbjct: 146 GVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGK 196
Score = 37.5 bits (83), Expect = 0.44
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNM R G MF+P K +R+W ARGH I +P+
Sbjct: 91 AFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQ 149
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 107 bits (257), Expect = 4e-22
Identities = 65/170 (38%), Positives = 86/170 (50%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF APIR D+V VH +M+KNSRQ Y V++ +G SA SWGTGRAVARIPR+ GGGT
Sbjct: 26 VFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHSWGTGRAVARIPRISGGGTST 85
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
SG G P + + + PS R H
Sbjct: 86 SGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSVPSLVMS-RGHQIG 144
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ P V D +Q KTK+A+ FL+ + A D+ +V S+ +RAG+GK
Sbjct: 145 NVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGK 194
Score = 54.8 bits (126), Expect = 3e-06
Identities = 26/59 (44%), Positives = 29/59 (49%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCRGGRMFAPTK +RRWH +RGH I +PE
Sbjct: 90 AFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPE 148
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 107 bits (256), Expect = 5e-22
Identities = 64/167 (38%), Positives = 86/167 (51%)
Frame = +3
Query: 231 APIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 410
+PIRPD+V+ VH++++KN RQP+ AGHQ SAESWGTGRAVAR+PR+ G GT R+GQ
Sbjct: 30 SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAESWGTGRAVARVPRISGSGTSRNGQ 89
Query: 411 GCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSR 590
P + + + PS R H +
Sbjct: 90 AAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSAIAASSNPSLVLA-RGHKIDNVP 148
Query: 591 AFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P V+D V++I KTK+AV L LKA D+ S+R+R G GK
Sbjct: 149 ELPLVVSDDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGK 195
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AF N RGG M++P K WRRWH ARGH I+ +PE
Sbjct: 91 AFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSAIAASSNPSLVLARGHKIDNVPE 149
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 106 bits (255), Expect = 6e-22
Identities = 67/172 (38%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF AP+R DLV VH +MSKN RQ Y VSK +G+QTSA SWGTGRA+AR+PRV+GGGTHR
Sbjct: 26 VFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTSARSWGTGRAMARVPRVKGGGTHR 85
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYR-RPSARSG*RTHY* 578
+GQ P L + P S R H
Sbjct: 86 AGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASALAATAVVPVVMS--RGHRI 143
Query: 579 KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKV-YXSQRLRAGKGK 731
+ R P V D +++INKTK AV L + +++ ++ + R R G+ K
Sbjct: 144 EALREVPMVVDDAIEQINKTKDAVKLLETIGLGAELKRIDKVTGRARDGRKK 195
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
A+ N CR G M+APT+ WRRWH +RGH IE + E
Sbjct: 90 AYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASALAATAVVPVVMSRGHRIEALRE 148
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 106 bits (254), Expect = 8e-22
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q SAESWGTGRAVARIPRV G GTHR
Sbjct: 28 VFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHSAESWGTGRAVARIPRVSGSGTHR 87
Query: 402 SGQG-----CLR*HVSWWTYV--RPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG 560
SGQ C + +S V R H + TA + G P +
Sbjct: 88 SGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATG------IVPLVLA- 140
Query: 561 *RTHY*KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
R H P V D ++ KT A+ FL+R A+ D+ KV ++ +RAG K
Sbjct: 141 -RGHRISQVPQIPLVVEDKIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISK 196
Score = 46.8 bits (106), Expect = 7e-04
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGN CR GRM P K WRRWH ARGH I ++P+
Sbjct: 92 AFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATGIVPLVLARGHRISQVPQ 150
Score = 33.5 bits (73), Expect = 7.1
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 758 KGPLII-FTKDQGLTRAFRNIPGVE 829
KGPL++ F ++ L +AFRN+PGVE
Sbjct: 206 KGPLVVYFNENAKLLKAFRNVPGVE 230
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 103 bits (247), Expect = 6e-21
Identities = 67/172 (38%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF +P+R DLV V +MSKN RQ Y VS +AGHQ SAESWGTGRAVARIPRV GT R
Sbjct: 28 VFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAESWGTGRAVARIPRVSASGTSR 87
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
SGQG P++ + + PS R H
Sbjct: 88 SGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAAIAATGCPSLVMA-RGHRIN 146
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRL-KAWSDILK-VYXSQRLRAGKGK 731
+ P +++ +Q INKT AV F + K + +K + S +R GKGK
Sbjct: 147 NVPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGK 198
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCRGG MF+P K +RR+H ARGH I +PE
Sbjct: 92 AFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAAIAATGCPSLVMARGHRINNVPE 150
Score = 33.5 bits (73), Expect = 7.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 761 GPLIIFTKDQGLTRAFRNIPGVE 829
GPL+++ +D G+ +A RNI GV+
Sbjct: 209 GPLVVYAEDNGIVKAMRNIKGVD 231
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 99.1 bits (236), Expect = 1e-19
Identities = 62/170 (36%), Positives = 84/170 (49%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF+ PIR DL+ + +MSKN R PY V AG++TSAESWGTGRAVARIPRV GGGTHR
Sbjct: 27 VFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAGYETSAESWGTGRAVARIPRVPGGGTHR 86
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
+GQ P + + S S R H
Sbjct: 87 AGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSSIAASGITSLVLA-RGHRIS 145
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ + P ++ ++ + KTK A+ FL L ++ ++ S +LRA GK
Sbjct: 146 NLKEVPLVASNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGK 195
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/59 (40%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCRGG MF PTK WRRW ARGH I + E
Sbjct: 91 AFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSSIAASGITSLVLARGHRISNLKE 149
Score = 39.1 bits (87), Expect = 0.14
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 761 GPLIIFTKDQGLTRAFRNIPGVE 829
GPLII++ D G+ +AFRNIPGV+
Sbjct: 206 GPLIIYSXDSGIKKAFRNIPGVD 228
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 98.3 bits (234), Expect = 2e-19
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF P+R DLV+ VH +MSKN RQ Y +S+ +G+QTSA SWGTGRA++R PRV+GGGTHR
Sbjct: 26 VFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQTSARSWGTGRALSRTPRVKGGGTHR 85
Query: 402 SGQ 410
SGQ
Sbjct: 86 SGQ 88
Score = 48.0 bits (109), Expect = 3e-04
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
A+ N CR G MFAPT+ WR WH +RGH +E +PE
Sbjct: 90 AYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVSVAATASVPLVMSRGHRVESVPE 148
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 95.5 bits (227), Expect = 2e-18
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 3/173 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF PIR ++V +V+V+++KN++QP+ AG + SA SWGTGRA A +PRV G G++R
Sbjct: 24 VFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAISWGTGRAKACVPRVNGSGSNR 83
Query: 402 SGQGCLR*HVSWWTYVRPHEALAAL---APSRQPPTAESGLGGSRCCYRRPSARSG*RTH 572
+GQG P L PSRQ A + + AR H
Sbjct: 84 NGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASAIAATAVVPLVQARG----H 139
Query: 573 Y*KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ + P V D VQEI +T+ AV L+++ + D+ +V R+ KGK
Sbjct: 140 VLGEVKEVPIVVVDAVQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGK 192
Score = 43.2 bits (97), Expect = 0.009
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +2
Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
KGPL+I+ +D+G+ +AFRNIPGVE
Sbjct: 202 KGPLVIYNEDKGIVKAFRNIPGVE 225
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 91.1 bits (216), Expect = 3e-17
Identities = 60/170 (35%), Positives = 84/170 (49%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGRAV+R+PRV G GTHR
Sbjct: 22 VFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAVSRVPRVPGSGTHR 81
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
SGQG + P +S + + S R + K
Sbjct: 82 SGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVS-RGYRVK 140
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P+ + D +++I KT+ + L L + I++ ++L++GKGK
Sbjct: 141 TIPEIPFVIEDSIEKIPKTRDLIKILTTL-GINSIVRNKLKRKLKSGKGK 189
Score = 41.9 bits (94), Expect = 0.020
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
A N CRGGR+F PT WR+WH +RG+ ++ IPE
Sbjct: 86 AIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVSRGYRVKTIPE 144
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 81.4 bits (192), Expect = 3e-14
Identities = 37/45 (82%), Positives = 41/45 (91%)
Frame = +3
Query: 597 PWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P V+D +QEINKTKQAVIFLRR+KAWSD+LKVY SQRLRAGKGK
Sbjct: 16 PLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGK 60
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
KGPLII+ KDQGLTR+FRNIPGV+
Sbjct: 70 KGPLIIYNKDQGLTRSFRNIPGVD 93
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 78.2 bits (184), Expect = 3e-13
Identities = 60/172 (34%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG-GTH 398
VF P+RPD++N VH + K R PY VS+ AG Q +A SWG GRAVAR+PR GG G +
Sbjct: 23 VFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTAHSWGPGRAVARLPRKHGGIGAY 82
Query: 399 RS-GQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY 575
+ +G H + T +R L R S L S +A R H
Sbjct: 83 ANFARGGHMAHPT--TVIRRWCRKVNLNQRRY--AVASALAAS-----ANAALVEARGHR 133
Query: 576 *KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
D + P V D + KTK A+ ++ + D+ + S+ +RAG+GK
Sbjct: 134 IADVPSIP-LVVD-TDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGK 183
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 77.4 bits (182), Expect = 4e-13
Identities = 47/169 (27%), Positives = 73/169 (43%)
Frame = +3
Query: 225 FKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRS 404
F+ P+R DL+ ++ N RQPY AG +TSAESWG G VA +PRV+G +
Sbjct: 22 FEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAA 81
Query: 405 GQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KD 584
G+ + L + +P R H D
Sbjct: 82 GRAARVAQAVGGQKAHAPTPEKDWTQRVNRKERRAALRSALAATAKPEFVKE-RGHVIDD 140
Query: 585 SRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P V D ++ +NK ++ F + + W+D+ + ++R+RAGKGK
Sbjct: 141 VPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGK 189
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 77.0 bits (181), Expect = 6e-13
Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Frame = +3
Query: 279 KNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGCLR*HVSWWTYVRPH 458
++++ V +AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ P
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPT 81
Query: 459 EALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRAFPWFVADXV---QEI 629
+ + P+ R H P ++ I
Sbjct: 82 KVWRKWHQKINLNQKRFATASALAASGSPALLMA-RGHNVSTVPEVPLVISSTAFADAAI 140
Query: 630 NKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
KT AV L+ + A +D K S++LRAGKGK
Sbjct: 141 RKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGK 174
Score = 56.8 bits (131), Expect = 7e-07
Identities = 25/59 (42%), Positives = 28/59 (47%)
Frame = +1
Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
AFGNMCR GRMFAPTK WR+WH ARGH + +PE
Sbjct: 67 AFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASALAASGSPALLMARGHNVSTVPE 125
Score = 33.5 bits (73), Expect = 7.1
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Frame = +2
Query: 758 KGPLIIFTKDQG---LTRAFRNIPGVE 829
+GPL+I+ D+ L +AFRNIPGVE
Sbjct: 184 RGPLVIYNPDEDGKELVKAFRNIPGVE 210
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 74.5 bits (175), Expect = 3e-12
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +3
Query: 246 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 392
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGRA +PRVRGGG
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGRARGPMPRVRGGG 73
Score = 55.6 bits (128), Expect = 2e-06
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +3
Query: 618 VQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
V+ KTK+ V+ L++LKAW+DI KVY SQR+RAGKGK
Sbjct: 99 VEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGK 136
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 70.5 bits (165), Expect = 5e-11
Identities = 48/170 (28%), Positives = 78/170 (45%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
+F P+R DL+ V ++ +S QP AG +TSAES+G +AR+PRV+ G
Sbjct: 28 IFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKNSGEAA 87
Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
+ +++ V A A ++ + + + R R H K
Sbjct: 88 LAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRA------RGHVFK 141
Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
DS FP V D + + T + FL+++ + D+ +V R+RAGKGK
Sbjct: 142 DSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGK 191
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 63.7 bits (148), Expect = 6e-09
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 2/171 (1%)
Frame = +3
Query: 225 FKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRS 404
F PIRPDL+ ++S QP V + AG + S ES+G G +ARIPR +G R
Sbjct: 48 FLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR- 106
Query: 405 GQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGG--SRCCYRRPSARSG*RTHY* 578
GC + P + L + + + YR A G H
Sbjct: 107 --GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARG---HVV 161
Query: 579 KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ + P V ++IN+ K+A L W D+ + ++RAGKGK
Sbjct: 162 EKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGK 212
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 597 PWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKCATXXXXXXXXXXXX 776
P V D V+ KT++AV+ L++LKAW+DI KVY SQR+RAGKGK
Sbjct: 14 PLVVEDKVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNPLASSAGDPASS 73
Query: 777 XQRIRV*LAPSATS 818
+ V PS TS
Sbjct: 74 TMKTTVSSRPSETS 87
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 54.4 bits (125), Expect = 4e-06
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 315 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGCL 419
+G+Q SA+SWG GR +ARIPR++G GT ++GQG L
Sbjct: 59 SGNQVSAKSWGPGRGLARIPRIKGSGTRKAGQGAL 93
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 54.0 bits (124), Expect = 5e-06
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH- 398
VF +R D++ ++S + RQPY S AG + + G ++R+PR+ GG
Sbjct: 23 VFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVV 82
Query: 399 --RSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTH 572
S G H R + L R+ A+ R H
Sbjct: 83 GIASAVGGKSAHSP-----RTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRG----H 133
Query: 573 Y*KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
K+ P V D V+ INKTK A+ L+ L + DI + + +RAG+GK
Sbjct: 134 RFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGK 186
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 53.2 bits (122), Expect = 8e-06
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
+F+ RPD++ +SM QP+ AG +T+AES+G+GR A +PRV+G
Sbjct: 22 IFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKGSSKAA 81
Query: 402 ---SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTH 572
G + H + HE + + +A + +R H
Sbjct: 82 FVPQAIGGRKAHPPRVNTIY-HEKINKKERTLAIRSAIAATANKELVEQR--------GH 132
Query: 573 Y*KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
+ P+ + D ++ + TK+ + L DI++ +++++GKGK
Sbjct: 133 QVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGK 185
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 47.6 bits (108), Expect = 4e-04
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 386
+F+ P+R DL+ +S QP AG +TSA S G GR VAR+PR++G
Sbjct: 34 IFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG 88
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 386
VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR A +P+ G
Sbjct: 21 VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDG 75
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 44.4 bits (100), Expect = 0.004
Identities = 16/24 (66%), Positives = 23/24 (95%)
Frame = +2
Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
+GPL+++++D G+TRAFRNIPGVE
Sbjct: 208 RGPLVVYSEDNGVTRAFRNIPGVE 231
Score = 41.5 bits (93), Expect = 0.027
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 597 PWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
P V D I KT +AV L++L A++DI KV S+ +R+GKGK
Sbjct: 154 PLVVDDSASSIKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGK 198
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 44.4 bits (100), Expect = 0.004
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 2/170 (1%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG--TGRAVARIPRVRGGGT 395
VF P R DL+ + + + QP AG SA+S TG ARI R++GGG
Sbjct: 21 VFGTPYRRDLIKKAYTILDTHHFQPKGTHPTAGMDVSADSLNPPTGHGQARIARMKGGGG 80
Query: 396 HRSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY 575
R G+ + P + + + L + S +G R H
Sbjct: 81 RRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLALCSAIAATASKSTVAG-RGHI 139
Query: 576 *KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGK 725
D P ++D ++ ++K + L L ++D+ ++ ++ R GK
Sbjct: 140 -IDGIELPIVISDDIESVSKASEVRKILSALGLFADVNRL-EGRKPRTGK 187
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG 389
VF RPD++ +++ + RQPY + +G S E+WG G AR+PR + G
Sbjct: 21 VFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG 76
>UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas putida W619|Rep: Putative uncharacterized
protein - Pseudomonas putida W619
Length = 852
Score = 40.3 bits (90), Expect = 0.062
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +2
Query: 455 PRSPGGVGTVASTSDSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPLVCSR 613
P P V +V SD G WRQ L + + FRL LK P+LPL SR
Sbjct: 318 PHWPAFVSSVVKVSDRGPYTWRQALAISDAALKFRLNIGKLKASPALPLHLSR 370
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 37.9 bits (84), Expect = 0.33
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 606 VADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
V D ++ KTK A+ FL+R A+ D+ KV ++ +RAG K
Sbjct: 1 VEDKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSK 42
Score = 33.5 bits (73), Expect = 7.1
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 758 KGPLII-FTKDQGLTRAFRNIPGVE 829
KGPL++ F ++ L +AFRN+PGVE
Sbjct: 52 KGPLVVYFNENAKLLKAFRNVPGVE 76
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 37.1 bits (82), Expect = 0.58
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 414 CLR*HVSWWTYVRPHEALAALAPSRQP 494
C+R HV WW +VR E L LAP QP
Sbjct: 142 CVRQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1513
Score = 36.3 bits (80), Expect = 1.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 540 AGSSNGCRQGRSPLSEVDATVPTPPGLRGGEHTSTTT 430
AG +G +P E+ A +P PPGL G+H S+ T
Sbjct: 232 AGLGDGTAVQMTPEGEIKAEIPKPPGLNDGDHVSSIT 268
>UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1512
Score = 36.3 bits (80), Expect = 1.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 540 AGSSNGCRQGRSPLSEVDATVPTPPGLRGGEHTSTTT 430
AG +G +P E+ A +P PPGL G+H S+ T
Sbjct: 232 AGLGDGSAVQMTPEGEIKAEIPKPPGLNDGDHVSSIT 268
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 35.9 bits (79), Expect = 1.3
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = +3
Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESWGTGRAVARIPRV 380
VF IR DL+ ++ N RQ Y + +AG + S E WG GR V+RI R
Sbjct: 53 VFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWWGKGRGVSRIMRK 112
Query: 381 RGGGT 395
G T
Sbjct: 113 AGQRT 117
>UniRef50_A6SMM1 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 359
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 537 GSSNGCRQGRSPLSEVDATVPTPPGLRGGEHTSTTTHVTEGXPD 406
G S + G+ P + T PT PGL+ +ST+T + G PD
Sbjct: 239 GRSTSSKTGKKPDIKRSQTAPTTPGLQPSFQSSTSTSIRAGTPD 282
>UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1628
Score = 35.1 bits (77), Expect = 2.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 417 GXPDRTYEYHHHGHAEFGRQHVQ-YPMIQHWF 325
G PD + +HHHGH G HV+ YP F
Sbjct: 182 GAPDTRHGHHHHGHHNHGHHHVEPYPATDSLF 213
>UniRef50_Q5WBL2 Cluster: Nitrate/sulfonate/bicarbonate ABC
transporter substrate-binding protein; n=1; Bacillus
clausii KSM-K16|Rep: Nitrate/sulfonate/bicarbonate ABC
transporter substrate-binding protein - Bacillus clausii
(strain KSM-K16)
Length = 344
Score = 34.7 bits (76), Expect = 3.1
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -3
Query: 516 QGRSPLS--EVDATVPTPPGLRGGEHT---STTTHVTEGXPDRTYEYHHHGHAEFGRQHV 352
QGRS L EVDA P G EHT T H EG P+RT+ + AE + +
Sbjct: 192 QGRSALETGEVDALASWDPFFAGVEHTLDVKTLDHNVEGYPNRTFYFSTPQFAEESPELI 251
Query: 351 Q 349
Q
Sbjct: 252 Q 252
>UniRef50_Q0FXC5 Cluster: Cytochrome c family protein; n=1;
Fulvimarina pelagi HTCC2506|Rep: Cytochrome c family
protein - Fulvimarina pelagi HTCC2506
Length = 181
Score = 34.7 bits (76), Expect = 3.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 447 HTSTTTHVTEGXP--DRTYEYHHHGHAEFGRQHVQYPMIQHW-FGDQPP 310
H T +G P R YE +HHG F + Q HW FG+ PP
Sbjct: 107 HVENTAESEQGPPLIHRIYEPNHHGDQAFLIEATQGARAHHWQFGNMPP 155
>UniRef50_Q550Q3 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 728
Score = 34.7 bits (76), Expect = 3.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 395 STTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNIIDQV 246
ST +T T +S S++STP F + L S+ H V +L V++ID V
Sbjct: 580 STLSTSTSSSSSSSNSTPTFKSSLFVSIRGHRVLFLHLLTMAIVSLIDTV 629
>UniRef50_Q8NIY2 Cluster: Related to acid proteinase; n=1;
Neurospora crassa|Rep: Related to acid proteinase -
Neurospora crassa
Length = 345
Score = 34.7 bits (76), Expect = 3.1
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 431 VVVDVCSPPRSPGGV-GTVASTSDSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLP 598
V+V+ PP+SP GV G V +G W+ L ++Q S+ LED L+ P LP
Sbjct: 218 VLVENYGPPQSPKGVDGKVKIPIATGSLIWKDMPPLCSAQASWILEDFPLQERPELP 274
>UniRef50_Q96XX4 Cluster: 217aa long hypothetical sulfocyanin; n=1;
Sulfolobus tokodaii|Rep: 217aa long hypothetical
sulfocyanin - Sulfolobus tokodaii
Length = 217
Score = 34.7 bits (76), Expect = 3.1
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -1
Query: 464 GFVGANIRPPRHMLPKAXLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLP 288
GF+ N + LPK+ ++TTTT T S +TS+T ST +SL A+ LP
Sbjct: 21 GFIAYNFAMVTYPLPKSHAAIILTTTTTTTSTSTTTTSTT---STTTTSSLPPGAIALP 76
>UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio
rerio|Rep: Ribosomal protein L4 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 108
Score = 34.3 bits (75), Expect = 4.1
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +2
Query: 419 SVTCVVVDVCSPPRSPGGVGTVASTSDSGERPWRQPLLL 535
S CVVVD C P+ PG VGT S P P LL
Sbjct: 41 SEICVVVDACLLPQRPGVVGTAGSMLTRSVMPCALPWLL 79
>UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2;
Methylobacterium extorquens PA1|Rep: Putative
uncharacterized protein - Methylobacterium extorquens
PA1
Length = 711
Score = 34.3 bits (75), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 468 PGLRGGEHTSTTTHVTEGXPDRTYEYHHHGHAEFGR 361
PG+ GG+H V + E HHHG E GR
Sbjct: 447 PGIEGGQHAGIAGDVRQSGGGHGQEPHHHGRPEEGR 482
>UniRef50_UPI0000F2E191 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 278
Score = 33.9 bits (74), Expect = 5.4
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Frame = +3
Query: 351 GRAVARIPRVRGGGTHRSGQGCLR*HVSWWTYVR--------PHEALAALAPSRQPPTAE 506
GR PR RG +G G + V W R P + + A + P +
Sbjct: 105 GRGNDGSPRPRGSAQEAAGSGFPKHSVFPWPQARGSRAPEMEPIKGASGRAGPARTPGSR 164
Query: 507 SGLGGSRCCYRRPSAR 554
SG G RCC R PS +
Sbjct: 165 SGTGHPRCCLRHPSTK 180
>UniRef50_UPI000023E380 Cluster: hypothetical protein FG10835.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG10835.1 - Gibberella zeae PH-1
Length = 1503
Score = 33.9 bits (74), Expect = 5.4
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 275 VQELEAALLREQGGWSPN---QC*IMGYWTCCRPNSACPWWWYS*VRSGXPSVTCVVVDV 445
V E +AA++R+ G W+ Q + + C S PW S + S+T + ++
Sbjct: 588 VWERQAAIIRKWGEWAVQHGQQQLAIRCFACTDQESTEPWTSPSAAQLNFQSMTPSIPEI 647
Query: 446 CSPPRSPGGV 475
SPP SP GV
Sbjct: 648 LSPPLSPPGV 657
>UniRef50_A0H7D7 Cluster: Cytochrome c, class I; n=4;
Comamonadaceae|Rep: Cytochrome c, class I - Comamonas
testosteroni KF-1
Length = 991
Score = 33.9 bits (74), Expect = 5.4
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 303 VSKEAGHQTSAESWGTGRAVARIPRVRGG-GTHRSGQGCLR*HVSWW 440
VS G Q S ES TGR V R+ G GT R CL H+S W
Sbjct: 94 VSHSPGSQESYESIDTGRYVWRMAGASAGSGTARVAAWCLDGHISLW 140
>UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 131
Score = 33.9 bits (74), Expect = 5.4
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 458 VGANIRPPRHMLPKA 414
VGANI PPRHMLPKA
Sbjct: 107 VGANILPPRHMLPKA 121
>UniRef50_A6QT67 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 551
Score = 33.5 bits (73), Expect = 7.1
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -3
Query: 519 RQGRSPLSEVDATVPTPPGLRGGEHTSTTTHVTEGXPDRTYE----YHHHGHAEFGR 361
R+ +PL+ V+ VPTP RG T T EG T E Y HHG + R
Sbjct: 412 RKSSTPLAVVETIVPTPQSYRGIIGTMWTIVYEEGTNPHTLELEQVYAHHGAEQSSR 468
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 862,357,830
Number of Sequences: 1657284
Number of extensions: 17941832
Number of successful extensions: 56412
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56210
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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