Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F04
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   149   5e-37
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   149   7e-37
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   6.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   8.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  149 bits (361), Expect = 5e-37
 Identities = 81/171 (47%), Positives = 100/171 (58%)
 Frame = +3

Query: 219 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 398
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 399 RSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY* 578
           RSGQ              P +                 +  +      PS     R H  
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLA-RGHRI 144

Query: 579 KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
           ++    P  V D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGK 195



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/59 (47%), Positives = 30/59 (50%)
 Frame = +1

Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPE 149



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +2

Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
           +GPL++F +D G+ +AFRNIPGVE
Sbjct: 205 RGPLVVFNEDTGIVKAFRNIPGVE 228


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  149 bits (360), Expect = 7e-37
 Identities = 81/171 (47%), Positives = 100/171 (58%)
 Frame = +3

Query: 219 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 398
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 399 RSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY* 578
           RSGQ              P +                 +  +      PS     R H  
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLA-RGHRI 144

Query: 579 KDSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
           ++    P  V D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGK 195



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/59 (47%), Positives = 30/59 (50%)
 Frame = +1

Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPE 149



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +2

Query: 758 KGPLIIFTKDQGLTRAFRNIPGVE 829
           +GPL++F +D G+ +AFRNIPGVE
Sbjct: 205 RGPLVVFNEDAGIVKAFRNIPGVE 228


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 428 MLPKAXLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 255
           +LP A +T PM  TTT      + T++TP   T ++T ++        V+G   V+ I
Sbjct: 192 ILPMAAMTTPMEETTTTPM---EETTTTPMVET-MITPMVEAMTTPTEVVGRSMVSTI 245


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 201 APCTVSLFSEYTDXKGRATDRLISLL 124
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,894
Number of Sequences: 5004
Number of extensions: 63464
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)