Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F04
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   124   1e-28
07_01_0578 + 4295386-4296489,4297394-4297507                          123   2e-28
10_02_0199 + 6668902-6669293,6669825-6669882                           31   1.6  
03_05_0366 - 23505755-23506441                                         30   2.1  
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645...    30   2.1  
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149     30   2.1  
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657           30   2.8  
03_01_0350 - 2753217-2754152                                           30   2.8  
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    29   4.8  
06_01_0017 + 189346-189561,189614-189905,190024-190043                 29   6.4  
03_06_0199 + 32310272-32311432                                         29   6.4  
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    28   8.5  
07_03_0623 - 20033815-20034009,20034308-20034415,20034416-200344...    28   8.5  
07_01_0380 - 2834080-2834451,2835945-2836130                           28   8.5  
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312           28   8.5  
03_05_0670 - 26594292-26594785,26595222-26595531                       28   8.5  
02_04_0457 + 23093020-23093343,23093798-23093806                       28   8.5  

>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  124 bits (298), Expect = 1e-28
 Identities = 71/170 (41%), Positives = 92/170 (54%)
 Frame = +3

Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
           V +APIRPD+V   H  +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 30  VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89

Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
           +GQG             P +                 +  +      PS     R H  +
Sbjct: 90  AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLA-RGHRIE 148

Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
               FP  V+D ++ I KT Q++  L+++ A++D  K   S  +RAGKGK
Sbjct: 149 GVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGK 198



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 29/59 (49%), Positives = 30/59 (50%)
 Frame = +1

Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
           AFGNMCRGGRMFAPTK WRRWH                          ARGH IE +PE
Sbjct: 94  AFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPE 152



 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +2

Query: 758 KGPLIIF-TKDQGLTRAFRNIPGVE 829
           KGPLI++ T+   + +AFRN+PGV+
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVD 232


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  123 bits (296), Expect = 2e-28
 Identities = 70/170 (41%), Positives = 91/170 (53%)
 Frame = +3

Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
           VF+AP+RPD+V  VH  +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31  VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90

Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
           +GQG             P +                 +  +      PS     R H  +
Sbjct: 91  AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLA-RGHRIE 149

Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
                P  ++D  + I KT QA+  L+++ A++D  K   S  +R GKGK
Sbjct: 150 TVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGK 199



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 28/59 (47%), Positives = 30/59 (50%)
 Frame = +1

Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
           AFGNMCRGGRMFAPTK WR+WH                          ARGH IE +PE
Sbjct: 95  AFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPE 153



 Score = 32.3 bits (70), Expect = 0.52
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +2

Query: 758 KGPLIIF-TKDQGLTRAFRNIPGVE 829
           KGPLI++ T+   + +AFRN+PGV+
Sbjct: 209 KGPLIVYGTEGSKIVKAFRNLPGVD 233


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 333 AESWGTGRAVARIPRVRGGGTHR 401
           A+SW TGRA A + R R GG  R
Sbjct: 36  AQSWATGRAAAELGRGRKGGRRR 58


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 219 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 395
           ++  AP   D   +V  S +   R  P C S E   + +AES  TG A  R  R+  G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167

Query: 396 H 398
           +
Sbjct: 168 N 168


>01_06_0781 +
           31962661-31963089,31963174-31963228,31964310-31964557,
           31965080-31965281,31965793-31965912,31965976-31966100,
           31966182-31966288,31966726-31966792
          Length = 450

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 586 PEPSPGL*PTKSRRSTRPNRLSS 654
           P PSPGL P  SRRS+ P  +SS
Sbjct: 80  PYPSPGLPPLPSRRSSSPFAISS 102


>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
          Length = 248

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 441 STTTHVTEGXPDRTYEYHH-HGHAEFGRQHVQYPMIQH 331
           +T  H+    P  T+++HH HGH  FGR H  +P   H
Sbjct: 132 ATVIHMVHDYP-YTHDHHHGHGHHLFGRDH--WPASHH 166


>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
          Length = 390

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 411 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 310
           P   + +HHHGH     +  Q     H  G  PP
Sbjct: 33  PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 408 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 310
           D    +HHH H   G  H Q    QH     PP
Sbjct: 32  DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64


>03_01_0350 - 2753217-2754152
          Length = 311

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 510 RSPLSEVDATVP-TPPGLRGGEHTSTTTHVTEGXPDRTYEYHHHGH 376
           R P    D T+P TPP        ++ TH  +     +   HHH H
Sbjct: 165 RCPFCRSDVTLPFTPPAAAAPVRPTSATHPDDDEDAESARRHHHHH 210


>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 486 ATVPTPPGLRGGEHTSTTTHVTEGXPDRTYEYHHHGHAE 370
           AT    P + G  H +T  H T     + Y +HHH H +
Sbjct: 352 ATQAAGPAIYGA-HPATQPHYTAAVAAQEYYHHHHHHLQ 389


>06_01_0017 + 189346-189561,189614-189905,190024-190043
          Length = 175

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 576 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 469
           N+ +S L+ +WDAGS +        SPLS V A    P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140


>03_06_0199 + 32310272-32311432
          Length = 386

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 477 PTPPGLRGGEHTSTTTHVTEGXPDRTYEYHHHGHAEFGR 361
           P  P LRGG    +  H+ +G  DR      HG  E  R
Sbjct: 206 PRVPLLRGGIRGGSAAHLQDGQKDRADLQDEHGRGEGDR 244


>07_03_0965 -
           22996575-22999112,22999202-22999636,22999717-22999801,
           22999888-22999957,23000050-23000293,23000396-23000482,
           23000655-23000706,23000830-23001226,23001324-23001648,
           23001748-23001914,23002007-23002547
          Length = 1646

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 516 QGRSPLSEVDATVPTPPGLRGGEHTSTTTHVTEGXPDRTYEYHHHG 379
           Q RSP +    + P P G  GG H S+++  + G     + +HHHG
Sbjct: 102 QRRSPSTAPPPSPPQPSG-GGGHHHSSSS--SGGGGGGYHNHHHHG 144


>07_03_0623 -
           20033815-20034009,20034308-20034415,20034416-20034478,
           20035361-20036221,20036881-20037461,20037551-20037623,
           20037756-20037947,20038728-20039513
          Length = 952

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 152 RPLXSVYSEKSETVQ-GAAKPLPXRVQGAHPSGPG 253
           +PL     E+S+ VQ GAA  L   V+GA P GPG
Sbjct: 193 KPLFEAMGEQSKAVQGGAAACLAKTVEGAGP-GPG 226


>07_01_0380 - 2834080-2834451,2835945-2836130
          Length = 185

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +3

Query: 321 HQ-TSAESWGTGRAVARIPRVRGGGTHRSGQGCLR*HVSWWTYVRPH---EALAALAPSR 488
           HQ  S+   G   A AR   V G  +  SG G           V P    +A AA AP+ 
Sbjct: 92  HQGESSSGGGVSTAAARHCDVAGSSSSHSGSGSGSATPPRPALVSPRAGLQAAAAAAPTM 151

Query: 489 QPPTAESGLGGSRCCYR 539
             P A SGL   R   R
Sbjct: 152 NQPPAASGLSMKRSLQR 168


>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
          Length = 133

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 380 DTRNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 246
           + R+SG  T     F+    L    + H +G+  VLG +N+ ++DQ+
Sbjct: 85  EARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131


>03_05_0670 - 26594292-26594785,26595222-26595531
          Length = 267

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 378 VRGGGTHRSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSAR 554
           V GGG    G G  R    W   +RP  +LAA+ P+   P  E   G  +   RR  +R
Sbjct: 10  VSGGG---GGSGLTR---RWRRQIRPPRSLAAVDPAPSSPRGERRQGEEKADRRRLRSR 62


>02_04_0457 + 23093020-23093343,23093798-23093806
          Length = 110

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 318 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 413
           G + S   W  G A A    VRGGG  RSG G
Sbjct: 76  GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGG 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,826,373
Number of Sequences: 37544
Number of extensions: 557365
Number of successful extensions: 1898
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)