Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F04
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   132   3e-31
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.     29   4.3  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   5.7  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   5.7  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   5.7  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    28   7.5  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  132 bits (319), Expect = 3e-31
 Identities = 75/170 (44%), Positives = 94/170 (55%)
 Frame = +3

Query: 222 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 401
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 402 SGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*K 581
           SGQG             P +       +         +  +      P+     R H   
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQA-RGHVID 144

Query: 582 DSRAFPWFVADXVQEINKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGK 731
                P  V+D V+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGK 194



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 25/59 (42%), Positives = 30/59 (50%)
 Frame = +1

Query: 415 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPE 591
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAE 148



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 761 GPLIIFTKDQGLTRAFRNIPGVE 829
           GP++I+ +D    RAFRNIPGV+
Sbjct: 205 GPVVIYGQDAECARAFRNIPGVD 227


>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 479 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPL 601
           T+A TS   DS ++ +RQ LLL    RSF L   ++ +F  LP+
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPV 399


>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 479 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPL 601
           T+A TS   DS ++ +RQ LLL    RSF L   ++ +F  LP+
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPV 399


>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 479 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPL 601
           T+A TS   DS ++ +RQ LLL    RSF L   ++ +F  LP+
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPV 399


>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 479 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPL 601
           T+A TS   DS ++ +RQ LLL    RSF L   ++ +F  LP+
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPV 399


>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
          Length = 1800

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 479 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSLPL 601
           T+A TS   DS ++ +RQ LLL    RSF L   ++ +F  LP+
Sbjct: 380 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPV 423


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 431 HMLPKAXLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAH 303
           H +P A  +  +STTTT T + G  ++STP   +G  T  + H
Sbjct: 757 HSIPTAMTS--LSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLH 797


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 431 HMLPKAXLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAH 303
           H +P A  +  +STTTT T + G  ++STP   +G  T  + H
Sbjct: 757 HSIPTAMTS--LSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLH 797


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 492  VDATVPTPPGLRGGEHTSTTTHVTEGXPDRT-YEYHHHGHAEFG 364
            V+A++P    L  G+H S   H  EG  D + + +HHH    FG
Sbjct: 878  VEASLPFYEKLWYGDHASHQGH--EGHGDHSGHNHHHHKETSFG 919


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 471 PPGLRGGEHTSTTTHVTEGXPD--RTYEYHHHGHAEFGRQHVQYPMIQHWF 325
           P GLRG   T T  + +    +  R + YH + + +F      Y   +HW+
Sbjct: 550 PIGLRGINFTDTDRNASRTFSNIIRRFSYHQNPNFQFDGSWAAYEPRRHWY 600


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 576 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 469
           N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,984,237
Number of Sequences: 27780
Number of extensions: 393038
Number of successful extensions: 1170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)