Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F04
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.23 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 495 EVDATVPTPPGLRGGEHTSTTTHVT 421
           ++D  +P PP +RGGE T  T   T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDTLRKT 394


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 450 EHTSTTTHVTEGXPDRTYEYHHHGHAEFGRQHVQY 346
           +H + T   T G P     +HHH H     QH+ Y
Sbjct: 337 QHGNHTMGPTMGPP-----HHHHHHQTQSLQHLHY 366



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 449 SPPRSPGGVGT 481
           SPPR PGGV T
Sbjct: 397 SPPRGPGGVPT 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,063
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)