Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F03
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.84 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   1.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   5.9  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   7.8  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 316 LHSRRGCNVRARVLGMLWSDTRESLHGRHVRNLFAGDHH 432
           L SRR  N + +V    WS+  E +H +  RNLF  + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 616 VDSASVTAAFELSLQFRENSLGGLVC 539
           + S +VT A ++    REN+L GLVC
Sbjct: 721 IRSLAVTTALKMLCSIRENNLDGLVC 746


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 485 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 595
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 427 DHQQKDCVRDDHAVTLAYRSTASQER 350
           D   KD V DD  VTL    TA QER
Sbjct: 44  DFLTKDVVVDDKLVTLQLWDTAGQER 69


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 466 GEEEDAXHHLHNDDHQQKDCVRDDH 392
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,719
Number of Sequences: 5004
Number of extensions: 35079
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)