Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F02
         (1137 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   9.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 585 PPPGHSXSXXXPXTH 629
           P PGHS S   P TH
Sbjct: 326 PVPGHSTSPNLPLTH 340


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 806 PPXPPAXPXAAPPXAPP 856
           PP P   P   PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 782 PPXPXSXPPPXPPAXP 829
           PP P   P P PP  P
Sbjct: 175 PPLPQVPPLPLPPIFP 190



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 770 PPXPPPXPXSXPPPXPP 820
           PP P   P   PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 764 RRPPXPPPXPXSXPPPXPPA 823
           +RP  P P P   PP   P+
Sbjct: 21  KRPHSPEPYPPRCPPIYEPS 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,752
Number of Sequences: 336
Number of extensions: 1484
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 32991040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)