Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_F02
         (1137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.10 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.10
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = +2

Query: 740 QPRXXXXPRRPPXPPPXPXSXPPPXPPAXPXAAPPXAPPHXPXPXRPXRAXXPGRPSR 913
           QP      ++P    P P   P   P A    +PP  P   P P  P  A     PS+
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPN-PSQGPPPGGPPGAPPSQNPSQ 62


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 782 PPXPXSXPPPXPPAXPXAA 838
           PP P   PPP   + P +A
Sbjct: 338 PPKPAPPPPPPSSSGPDSA 356



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 761 PRRPPXPPPXPXSXPP 808
           P +P  PPP P S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 764  RRPPXPPPXPXS 799
            ++PP PPP P S
Sbjct: 1353 QQPPPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,337
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38439819
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)