Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E24
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           37   0.018
03_06_0471 + 34169562-34169892,34170121-34170347                       33   0.39 
02_04_0382 - 22501041-22501279,22501717-22501810                       32   0.52 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.8  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    30   2.8  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.7  
01_01_0082 + 625198-625719                                             29   6.4  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 216 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPG 386
           QP     Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP   P P  G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445

Query: 387 ARG 395
           A G
Sbjct: 446 AGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 237 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 386
           Y P    P    PP  Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 213 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 380
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY DPP    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 381 PGARGG 398
           P   GG
Sbjct: 87  PYYGGG 92


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 255 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 371
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +3

Query: 198 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDPPQGRPYF 365
           P P+  QP  G  Y P      Y   P ++     P    Y P   G  Y   PQG+PY 
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286

Query: 366 KPTPF 380
            P P+
Sbjct: 287 PPQPY 291


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
 Frame = +3

Query: 171 NADSVVINDPDPFFAQ------PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 332
           NA++     P P  A       P++ NG  P+     +  PP           P+ NGA 
Sbjct: 616 NANANAAPGPPPMMANAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAA 675

Query: 333 YVDPPQGRPYFKPTPFPG 386
              PP G P     P PG
Sbjct: 676 AAAPPGGNPAPPAGPQPG 693


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 243 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 383
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>01_01_0082 + 625198-625719
          Length = 173

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 219 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 395
           P  G GY P  +     NP   YNP  +G+    N   Y+ PP G  Y +   F P A  
Sbjct: 97  PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151

Query: 396 G 398
           G
Sbjct: 152 G 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,210
Number of Sequences: 37544
Number of extensions: 379961
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)