Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E17
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       62   5e-12
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 62.5 bits (145), Expect = 5e-12
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
 Frame = +2

Query: 587 GGXNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 766
           GG +V     +L +G H++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I
Sbjct: 309 GGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSI 368

Query: 767 -----HDVFQMLSADVQVILLSATMPDDVLXVSXCFMRD 868
                H+    L  + Q ++ SAT PD+V  ++  F+ +
Sbjct: 369 EKMVDHETMVPL-GERQTLMFSATFPDEVQHLARRFLNN 406



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
 Frame = +1

Query: 388 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVV 540
           RD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI + +
Sbjct: 234 RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQI 293

Query: 541 I 543
           +
Sbjct: 294 V 294



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 264 QVVETFDDMNLKEELLRGXYAYGFEKPSAIQQRAIMPCIQGTR 392
           Q +E+F+   L+  +L      G++KP+ +Q+ A +P I   R
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA-LPIIMNGR 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 410 SQELEKLLLSLYRFYNKSIQAFVNV 484
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 692 EAHDELSYHIHDLECPPPHEHHSP 621
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 757 LETSGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 647
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,592
Number of Sequences: 438
Number of extensions: 5622
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)