Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E16
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    63   2e-10
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...    63   2e-10
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    33   0.20 
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    32   0.47 
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    29   4.4  
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    29   4.4  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.7  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/66 (50%), Positives = 43/66 (65%)
 Frame = +1

Query: 211 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLXGCCXGIWPT 390
           M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+     +L G    +   
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFEL-QD 59

Query: 391 VALPXL 408
            ALP L
Sbjct: 60  CALPTL 65


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/66 (50%), Positives = 43/66 (65%)
 Frame = +1

Query: 211 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLXGCCXGIWPT 390
           M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+     +L G    +   
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFEL-QD 59

Query: 391 VALPXL 408
            ALP L
Sbjct: 60  CALPTL 65


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = -2

Query: 774 GGXPXXXXXXGGGXPXXXXXGXXGPGXXXFGXGGGXXFGTIXGPXXXGGG 625
           GG        GGG       G  G G   FG GGG  +G   G    GGG
Sbjct: 44  GGLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGG 93


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 20/69 (28%), Positives = 23/69 (33%)
 Frame = -2

Query: 774 GGXPXXXXXXGGGXPXXXXXGXXGPGXXXFGXGGGXXFGTIXGPXXXGGGXXXXXGXXKF 595
           GG        GGG       G  G G    G GGG   G++ G    GGG     G    
Sbjct: 52  GGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGG 111

Query: 594 XRXXXGSXG 568
            +   G  G
Sbjct: 112 NQGGGGGGG 120


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/73 (27%), Positives = 21/73 (28%)
 Frame = -2

Query: 774 GGXPXXXXXXGGGXPXXXXXGXXGPGXXXFGXGGGXXFGTIXGPXXXGGGXXXXXGXXKF 595
           GG        GGG       G  G G    G GGG       G    GGG     G    
Sbjct: 780 GGPTGSSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNG 839

Query: 594 XRXXXGSXGXALG 556
                G+ G   G
Sbjct: 840 GGAGDGNGGAGAG 852


>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/95 (24%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
 Frame = -2

Query: 879 GGXPPXXGXXXXXXXGXGGXKRVSPQGXXXXKXXXGGXPXXXXXXGGGXPXXXXXGXXGP 700
           GG P             GG   ++  G           P      GGG          G 
Sbjct: 245 GGAPRGASTMTAVGGAPGGASTMTAMGGGPSAFGGAPPPPSGSAMGGGGGGGATSAYFGV 304

Query: 699 GXXXFGXGG----GXXFGTIXGPXXXGGGXXXXXG 607
           G    G GG       FG   GP   GGG     G
Sbjct: 305 GSGAMGGGGAGAQSAYFGVGGGPVGGGGGGAKSGG 339


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
           family, class qprotein 3 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/95 (24%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
 Frame = -2

Query: 879 GGXPPXXGXXXXXXXGXGGXKRVSPQGXXXXKXXXGGXPXXXXXXGGGXPXXXXXGXXGP 700
           GG P             GG   ++  G           P      GGG          G 
Sbjct: 139 GGAPRGVSTMTAVGGAPGGASTMTAMGGGPSAFGGAPPPPSGSAMGGGGGGGATSAYFGV 198

Query: 699 GXXXFGXGG----GXXFGTIXGPXXXGGGXXXXXG 607
           G    G GG       FG   GP   GGG     G
Sbjct: 199 GSGAMGGGGAGAQSAYFGVGGGPVGGGGGGAKSGG 233


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/90 (27%), Positives = 26/90 (28%)
 Frame = -2

Query: 876 GXPPXXGXXXXXXXGXGGXKRVSPQGXXXXKXXXGGXPXXXXXXGGGXPXXXXXGXXGPG 697
           G P   G       G GG      +G        GG        GGG       G  G G
Sbjct: 44  GRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGN--WGGNGGGGNGGGGRGGGGGGG 101

Query: 696 XXXFGXGGGXXFGTIXGPXXXGGGXXXXXG 607
               G GGG   G   G    GGG     G
Sbjct: 102 GGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/62 (30%), Positives = 20/62 (32%)
 Frame = -2

Query: 774 GGXPXXXXXXGGGXPXXXXXGXXGPGXXXFGXGGGXXFGTIXGPXXXGGGXXXXXGXXKF 595
           GG        GGG       G  G G    G GGG   G   G    GGG     G  + 
Sbjct: 134 GGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGGCGRK 193

Query: 594 XR 589
            R
Sbjct: 194 KR 195


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/115 (22%), Positives = 26/115 (22%)
 Frame = +1

Query: 535 MXAPXQKXXGPAXGPXXXPXKFXXXXXXXGTPXXXXXAXNCPKXXPPPXPKXXXPXPXXP 714
           M  P     G    P   P            P         P   PPP P    P    P
Sbjct: 273 MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP----P 328

Query: 715 XXXXXXGPXPXXXXXXGGSPXXXFXXXXPLGGXPFXXPXPPXXPXXXXXXXGXAP 879
                  P P      GG P        P  G     P PP  P       G  P
Sbjct: 329 GMGGMPPPPPPGMRYPGGMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 382


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/115 (22%), Positives = 26/115 (22%)
 Frame = +1

Query: 535 MXAPXQKXXGPAXGPXXXPXKFXXXXXXXGTPXXXXXAXNCPKXXPPPXPKXXXPXPXXP 714
           M  P     G    P   P            P         P   PPP P    P    P
Sbjct: 283 MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP----P 338

Query: 715 XXXXXXGPXPXXXXXXGGSPXXXFXXXXPLGGXPFXXPXPPXXPXXXXXXXGXAP 879
                  P P      GG P        P  G     P PP  P       G  P
Sbjct: 339 GMGGMPPPPPPGMRYPGGMPPPP-PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIP 392


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 25/93 (26%), Positives = 27/93 (29%)
 Frame = -2

Query: 834 GXGGXKRVSPQGXXXXKXXXGGXPXXXXXXGGGXPXXXXXGXXGPGXXXFGXGGGXXFGT 655
           G GG       G        GG         GG P     G  G G    G  GG   G 
Sbjct: 110 GGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGG 169

Query: 654 IXGPXXXGGGXXXXXGXXKFXRXXXGSXGXALG 556
           + G    GGG     G   F     G  G  +G
Sbjct: 170 MGG-GGYGGGGDGGYGGGGFGGGGMGGYGGGMG 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,500
Number of Sequences: 27780
Number of extensions: 242671
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)