Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E16
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    26   0.40 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    26   0.40 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    26   0.40 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    26   0.40 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    26   0.40 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    26   0.40 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    26   0.53 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 51  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNY 98


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 51  NEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNY 98


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 52  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNY 99


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 52  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNY 99


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 52  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNY 99


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 348 HRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGSTSYNNSYRFSH 211
           + R  +K  E    RS++ + R   +  K + +LS +T +NN+Y++++
Sbjct: 52  NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNY 99


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -2

Query: 360 KYTHHRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGS---TSYNNSYRFSHFDI 202
           K   + R  +K  E    RS+N + R   K  K + +LS +    +YNN+Y+  H++I
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLHYNI 338


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 228 SCCNWCC 248
           SCC WCC
Sbjct: 10  SCCCWCC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,528
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)