Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E14
         (852 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC069226-1|AAH69226.1|  493|Homo sapiens tripartite motif-contai...    31   7.0  
BC018337-1|AAH18337.1|  206|Homo sapiens TRIM35 protein protein.       31   7.0  
AF492463-1|AAO85480.1|  493|Homo sapiens hemopoeitic lineage swi...    31   7.0  
AB029021-1|BAA83050.1|  504|Homo sapiens KIAA1098 protein protein.     31   7.0  
BC062344-1|AAH62344.1|  256|Homo sapiens PTCHD1 protein protein.       30   9.3  

>BC069226-1|AAH69226.1|  493|Homo sapiens tripartite
           motif-containing 35 protein.
          Length = 493

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 104 CTSCXFSCW-LSASPMCIAFVKRAAPKXANSLNTLAESAKKTIEELREKVESA 259
           C  C   CW +  SP C     RA+P    + +TL    +K    LRE+ E A
Sbjct: 41  CRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLNNLVEKL---LREEAEGA 90


>BC018337-1|AAH18337.1|  206|Homo sapiens TRIM35 protein protein.
          Length = 206

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 104 CTSCXFSCW-LSASPMCIAFVKRAAPKXANSLNTLAESAKKTIEELREKVESA 259
           C  C   CW +  SP C     RA+P    + +TL    +K    LRE+ E A
Sbjct: 41  CRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLNNLVEKL---LREEAEGA 90


>AF492463-1|AAO85480.1|  493|Homo sapiens hemopoeitic lineage switch
           gene 5 protein.
          Length = 493

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 104 CTSCXFSCW-LSASPMCIAFVKRAAPKXANSLNTLAESAKKTIEELREKVESA 259
           C  C   CW +  SP C     RA+P    + +TL    +K    LRE+ E A
Sbjct: 41  CRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLNNLVEKL---LREEAEGA 90


>AB029021-1|BAA83050.1|  504|Homo sapiens KIAA1098 protein protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 104 CTSCXFSCW-LSASPMCIAFVKRAAPKXANSLNTLAESAKKTIEELREKVESA 259
           C  C   CW +  SP C     RA+P    + +TL    +K    LRE+ E A
Sbjct: 52  CRGCVSRCWEVQVSPTCPVCKDRASPADLRTNHTLNNLVEKL---LREEAEGA 101


>BC062344-1|AAH62344.1|  256|Homo sapiens PTCHD1 protein protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 406 HSIYLGLCT*ILKNYFSGFRCFRGLQIFIKFVE 308
           +S +LG+   +L NY+S F CFR L +  +F++
Sbjct: 221 NSTFLGVPFVMLGNYYSSFFCFRLLVVLTRFLK 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,371,169
Number of Sequences: 237096
Number of extensions: 1107964
Number of successful extensions: 2103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)