Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_E13
(1407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.013
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.013
Identities = 22/95 (23%), Positives = 27/95 (28%)
Frame = +2
Query: 1010 PVPAPXLHXTPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTPPPXXXPRXTPXPLPTXSL 1189
P AP + P PP P PA PP P P+P S
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 1190 XXPPTTXDHXXISSLPPXDXAXRSXRVXXXXPXXP 1294
PP + +PP A + P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = +2
Query: 1010 PVPAPXLHXTPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTPPPXXXPRXTPXPLPTXSL 1189
PVPAP P P G PP P+ G PP P T P+PT S
Sbjct: 1170 PVPAPSSGIPPV---PKPAAGVPPVPPPSEAPPVPKPSVGVPP--VPPPSTAPPVPTPSA 1224
Query: 1190 XXPP 1201
PP
Sbjct: 1225 GLPP 1228
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Frame = +2
Query: 1079 PPFTXXXXRXPXXPAXGTPPPXXXPRXTPXPLPTXS----LXXPPTTXDHXXISSLPPXD 1246
PP P P T PP P TP P+P S PP I S+P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Query: 1247 XA 1252
A
Sbjct: 1081 GA 1082
Score = 27.5 bits (58), Expect = 4.7
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Frame = +2
Query: 1010 PVP--APXLHXTPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTP-PPXXXPRXTPXPLPT 1180
PVP AP + P PP P PA + PP P P+P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 1181 XSLXXPPTTXDHXXISSLPPXDXA 1252
S PP + +PP A
Sbjct: 1194 PS-EAPPVPKPSVGVPPVPPPSTA 1216
Score = 27.1 bits (57), Expect = 6.2
Identities = 25/122 (20%), Positives = 29/122 (23%)
Frame = +2
Query: 833 PXPXXVAPXPXFXSPHXRXXXXXSXPLXPXKXXPXXXXXXGPPXXTXXPXXLVXXTXLXP 1012
P P P P S P P P + P P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 1013 VPAPXLHXTPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTPPPXXXPRXTPXPLPTXSLX 1192
VP P + + P PP P P PP P P+P S
Sbjct: 1104 VPKPSV-----AVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 1193 XP 1198
P
Sbjct: 1159 PP 1160
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Frame = +2
Query: 1010 PVPAPXLHX----TPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTP-PPXXXPRXTPXPL 1174
PVPAP P P PP P P PP P P P+
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP-PV 1123
Query: 1175 PTXSLXXPP 1201
P S+ PP
Sbjct: 1124 PKPSVAAPP 1132
Score = 26.6 bits (56), Expect = 8.2
Identities = 22/77 (28%), Positives = 25/77 (32%)
Frame = +2
Query: 1010 PVPAPXLHXTPXXLXPXXXXGXPPPFTXXXXRXPXXPAXGTPPPXXXPRXTPXPLPTXSL 1189
PVP P + P P G PP P P PP P P+P S
Sbjct: 1160 PVPKPSVAAPPV---PAPSSGIPP-VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Query: 1190 XXPPTTXDHXXISSLPP 1240
P T + LPP
Sbjct: 1216 APPVPTPS----AGLPP 1228
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 910 PTPXXAXXGPXXXXXSSPLNXAPXPPCXXHG-ARSXPXPXPPPHP 1041
PTP A P +P+ P PP G A + P P PPP P
Sbjct: 742 PTPAPA---PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 901 IXSPTPXXAXXGPXXXXXSSPLNXAPXPPCXXHGARSXPXPXPPP 1035
+ +P P P P P PP GA P P PPP
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGP--PPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/76 (25%), Positives = 25/76 (32%)
Frame = +2
Query: 1109 PXXPAXGTPPPXXXPRXTPXPLPTXSLXXPPTTXDHXXISSLPPXDXAXRSXRVXXXXPX 1288
P P PP P P P+ + P + SSLPP + P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 1289 XPXARXXLXHRSPPRP 1336
P A + + PP P
Sbjct: 190 LPSAVPPMPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,435
Number of Sequences: 5004
Number of extensions: 13218
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 780960954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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