Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E12
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    29   0.89 
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   6.3  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 447 IPLIMVPMIFPLGSTALK-----DNPFSSESLQYSSTSRHEPESYNPTASFK 307
           +PL+M   + P  S ALK      NP ++ SL+ SS    E E + PT+  +
Sbjct: 174 MPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQ 225


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 531 YIF*PEGRKALNLLRNFQVIKFLWILXLQLQTRI 632
           YIF       LNL+ N  ++ FL+++ +++  R+
Sbjct: 83  YIFPTSSMGPLNLVSNLGLVLFLFVIGMEVDLRV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,296
Number of Sequences: 5004
Number of extensions: 58057
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)