Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E09
         (870 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    46   0.001
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.007
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.027
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.082

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 23/35 (65%), Positives = 24/35 (68%)
 Frame = +1

Query: 592 CINESANARGEAVCVLGALPLPRSLTRCARSFGXG 696
           CI + A AR EAV VL ALPL RS TRC RS G G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +1

Query: 616 RGEAVCVLGALPLPRSLTRCARSFGXGXRYXL 711
           R   +C  G +PLPRSLTR ARSFG G RY L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +2

Query: 539 NCIXFMFQVQGXVWXVFSALMNRPTRGERRFAYW 640
           NC+    +       V +ALMNRPTRGERRFAYW
Sbjct: 8   NCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.082
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 662 ERGSGRAPNTQTASPRALADSLMQ 591
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,942,625
Number of Sequences: 1657284
Number of extensions: 4357737
Number of successful extensions: 6317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6317
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)