Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E07
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.4  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 323 KPPEFPXNSXXFWYSLVGCNVXXXXHLPSINXRDGFSVAPTALI 192
           K P +P  +  F  +  G N+    H P      GFS AP   +
Sbjct: 417 KQPSYPVLTSDFEITDAGPNLSLSGHQPDNKYYKGFSSAPNLAV 460


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 417 HNRCWTCSXCEIM 455
           H++CWTC  C  +
Sbjct: 398 HSQCWTCGACNAL 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,410
Number of Sequences: 5004
Number of extensions: 14349
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)