Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E06
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195...    33   0.30 
01_07_0354 - 42969824-42969991,42970081-42970217,42970310-429704...    30   2.1  
05_01_0096 + 654074-654499,654673-655326                               29   4.9  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   6.4  

>04_04_1558 -
           34417801-34417920,34418930-34419051,34419458-34419531,
           34419736-34419819,34419945-34420080,34420806-34420836,
           34421228-34421386,34422375-34422595,34422685-34422898
          Length = 386

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 271 TLRSGLLRVSQLLTMTSPTPALTSRKAVSATPLSPSE*KAKDIILSTSRLK 423
           T+   L+R S+ L  TSP PA  +   +S++ LSP + +  D  L+ +R +
Sbjct: 12  TIADYLIRPSKRLRPTSPAPAAAASAPLSSSSLSPEQRRRADTNLALARAR 62


>01_07_0354 -
           42969824-42969991,42970081-42970217,42970310-42970449,
           42970703-42970806,42970924-42971040,42971137-42971223,
           42971309-42971410,42971643-42971740,42971835-42971910,
           42971992-42972156
          Length = 397

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 285 IIKGVAAIDNDFSHASANITEGGVGYSFVTVRMKSQRHHPLNFEVEI 425
           I++ V AI+  F H   N+   G+G   + ++   + H  LN E++I
Sbjct: 173 IVEQVLAIEETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKELKI 219


>05_01_0096 + 654074-654499,654673-655326
          Length = 359

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
 Frame = -3

Query: 566 IRLQLNITHGNYCGFKANYKNFFYNS-------TFIVTAVFHFEIISCKL*LEVNFNLEV 408
           +R+ LN+   N       Y    Y +       T ++T       +S  +  EVN  L+ 
Sbjct: 112 LRMSLNVLAVNIVSSDVGYPVLVYGTVIARDDETLVLTGPTRSIEVSDSVFFEVNLKLKE 171

Query: 407 ERMMSLAFHSDGD--KGVADTAFRDVSAGVGEVIVNSCDTLNNPLLRV 270
           E         D +  KG+ +     +  GV +V+V SC TL++ L  V
Sbjct: 172 EEDDGDVVVDDREFSKGLIEFRSLSMPRGVEDVVVGSCSTLDSRLSTV 219


>03_05_0001 -
           19386264-19386284,19386446-19386517,19386614-19387357,
           19387454-19388884,19388953-19389118,19392035-19392114,
           19392393-19392462,19392550-19392761,19392837-19392890,
           19393471-19393623,19393715-19393930,19394029-19394248,
           19394332-19394399,19394510-19394643,19394755-19394854,
           19394943-19395421,19395506-19395699,19396270-19396355,
           19396364-19396444,19396842-19397023,19397305-19397346,
           19398247-19398558,19399374-19399434,19399435-19399617,
           19399744-19399863,19400380-19401051,19402597-19402668,
           19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 370 SPSE*KAKDIILSTSRLKFTSSQSLQEM--ISKWKTAVTINVEL*KKFL*LALNPQ*FPC 543
           SPSE K +D+  +    KFT  +SL  +  +S   T + +++E+ KK L LAL     P 
Sbjct: 167 SPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEV-KKILLLALTMYQIPN 225

Query: 544 V 546
           V
Sbjct: 226 V 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,724
Number of Sequences: 37544
Number of extensions: 284117
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)