Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E05
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.8  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     29   5.0  
03_02_0178 + 6195402-6199158,6199438-6200003                           29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478...    28   8.7  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 520 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 401
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 473 WRNPTGL*RYQAFPPGSSLVRSPXSDPGRLPDTCPPFSLREA 598
           W  P     Y   PPGSS+   P   PG+   T PP+ ++ A
Sbjct: 436 WGQPPPYASYPPPPPGSSMYNPPPPAPGQA--TPPPYGVQYA 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 455 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPXSDPGRLP 565
           RR S  WR+  GL  Y+A P  S    SP + P RLP
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG--ASPPTPPLRLP 147


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 184 NESAN---ARGEAVCVLGALPLPRSLTRCAR 267
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>04_04_1398 -
           33245268-33245876,33247516-33247608,33247639-33247827,
           33248146-33248496
          Length = 413

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 642 VGRSLQAGLCARTPRFSPTAAPYPVTIVLSPXGKTRLIATGSSHW 776
           V RS +A L A   R +P A    +   L P G+ R IA G +HW
Sbjct: 82  VVRSPEA-LLAFVQRLTPEAVFRAIDWDLVPSGEARKIAEGRTHW 125


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 536 SPXSDPGRLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 649
           S  ++  RL D C P  L+E WRFL+A      A   S RC++
Sbjct: 842 SHITEEERLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,196,197
Number of Sequences: 37544
Number of extensions: 468874
Number of successful extensions: 1404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)