Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E04
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.23 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +1

Query: 85  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 264
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 265 KGSIIQNVVNNLIIDKRRNTMEYCYKL 345
              +  N+    I      TMEY  +L
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +1

Query: 85  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 264
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 265 KGSIIQNVVNNLIIDKRRNTMEYCYKL 345
              +  N+    I       MEY  +L
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEYSVQL 84


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 816 RPCVSXGVHDRTELQGIVELAIVDEEQDVVFV 721
           R C   G+HD  + Q  V   +VD   D+V +
Sbjct: 168 RNCELVGLHDLDQSQEYVRSKLVDFLNDLVAI 199



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 204 AVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSTFK 73
           A V+  ++V++  + G  NDA   G      YN  +  V  T K
Sbjct: 107 AGVRIYVDVIMNHMSGDRNDAHGTGNSRANTYNFDYPQVPYTVK 150


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 197 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGALSRSPSSLQIN 48
           +S SS +WL V+ +  T    A      +    F    +L +SP   + N
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEAN 479


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
 Frame = -1

Query: 173 LEVSADSSTTPALAASMHIANTTRSFILLG--------ALSRSPSSLQIN 48
           LE S   S +P      + +NT+++FIL          +L R P  +QIN
Sbjct: 80  LERSKTKSKSPESRDRSNTSNTSKTFILSDKLESSDDTSLFRGPKGIQIN 129


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 197 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGALSRSPSSLQIN 48
           +S SS +WL V+ +  T    A      +    F    +L +SP   + N
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEAN 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,621
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)