Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_E01
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.3  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.3  
U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 355 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 489
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 355 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 489
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 256 GKXYDIEMNNXDNYTNKKAVEEFLKMYRTGFMP 354
           G+ YD  +    +   KK +E   K  R GFMP
Sbjct: 80  GRVYDRHITGLCDENKKKLIEAIAKSRRAGFMP 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,671,229
Number of Sequences: 27780
Number of extensions: 174286
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)