Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D23
         (956 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    37   0.66 
UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    34   4.7  

>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 37.1 bits (82), Expect = 0.66
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 412 FFFXSXXGGGPPPPXFFXXXVFFFXXPPPP 501
           FF+    GG PPPP       FFF  PPPP
Sbjct: 76  FFYKKKRGGPPPPPTTQKKKNFFFSPPPPP 105



 Score = 33.5 bits (73), Expect = 8.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 458 KXGGGGPPPXXXKKKXXFFFFFFXXXXPPPXXPXG 354
           + GGGG PP    ++  FFFF      PPP    G
Sbjct: 39  REGGGGAPPPPPARRQKFFFFPHFFFPPPPRRGGG 73


>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
 Frame = -1

Query: 398 FFFXXXXPPPXXPXGXXPXXXXKXXRXXFFXIXXPQXXXGVXPPXKGG---GXGGXXIFF 228
           FFF     PP  P G  P          F     P    GV PP  GG   G GG   FF
Sbjct: 40  FFFNKKKRPPPPPGGPPPPFGGGGFPPFFHFF--PPPGGGVAPPQGGGPPLGGGGFQFFF 97

Query: 227 FGXXP 213
            G  P
Sbjct: 98  KGFLP 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,036,845
Number of Sequences: 1657284
Number of extensions: 6532368
Number of successful extensions: 9151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8216
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)