Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D22
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   4.6  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   4.6  
U80023-1|AAG24037.1|  180|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
            ZK512.5 protein.
          Length = 1232

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 622  ITKSTLKSXVAKPDRTIKIPGVSPLETPLVRSPXPDPXRXP-XYXVRLSPFREXXXLSPX 798
            + + T  + V  P  T+ +P + P+ TP++ SP P P   P    +  SP  E   L   
Sbjct: 940  VPEMTPPAIVKPPMPTLSMP-IPPVSTPIMVSPQPIPIPKPVDASIAKSPRSELDDLWDT 998

Query: 799  PPP 807
             PP
Sbjct: 999  SPP 1001


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
 Frame = +1

Query: 559 PGTVKRPRCWRFSIGSAP-LTSITKSTLKSXVAKPDRTIKIPGVSPLETPLVRSPXPDPX 735
           P     P   +F I + P  +S T  T       P   I  P  SP    + +SP P P 
Sbjct: 442 PPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 501

Query: 736 RXPXYXVRLSPFREXXXLSPXPPP 807
             P      +P        P PPP
Sbjct: 502 LPPI----ATPSSVPPPPPPPPPP 521


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +1

Query: 589 RFSIGSAPLTSITKSTLKSXVAKPDRTIKIP----GVSPLETPLV---RSPXPDPXRXPX 747
           + S G  P+T +   T++  +  P +T  +P     ++P++ P +   R+P   P     
Sbjct: 70  KLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPPGNLNPVQQPQIPVQRTPPQCPPPPVP 129

Query: 748 YXVRLSPFREXXXLSPXPPP 807
           +  +++        SP PPP
Sbjct: 130 HPPQITQMAPILPTSPAPPP 149


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/62 (30%), Positives = 19/62 (30%)
 Frame = -3

Query: 874 GGXGXTGPXXGGXTXTGXXXXXQXGXMXKAPXXPGREKGGXGXRXXGXGRXQESARGGFP 695
           GG G      GG    G       G        PG   GG      G GR     RGG  
Sbjct: 116 GGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGG 175

Query: 694 GG 689
           GG
Sbjct: 176 GG 177


>U80023-1|AAG24037.1|  180|Caenorhabditis elegans Hypothetical
           protein F07C4.7 protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = -3

Query: 874 GGXGXTGPXXGGXTXTGXXXXXQXGXMXKAPXXPGREKGGXGXRXXGXGRXQESARGGFP 695
           GG G  GP  GG    G       G         G   GG G    G G      RGG  
Sbjct: 25  GGPGFGGPGSGGPGPRGPGEWNNGGGRGGFGGNNGWNNGGGGFN--GNGGFNGGGRGGGR 82

Query: 694 GG 689
           GG
Sbjct: 83  GG 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,155
Number of Sequences: 27780
Number of extensions: 274704
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)