Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D20
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.4  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.7  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 403 PHDWADYEPDNAGDNENCILMNPDGNFADVN 495
           PH W DYE ++    +NC L + +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
 Frame = +2

Query: 323 VVYSPASMRHFLKETTVLLKGSHWRIFLTIGPIMNQIMPEITKTVSS*ILMETSPMLTVL 502
           + Y   S    + ET  LLK S   I+  + P + Q++P     +++ +++    +   L
Sbjct: 132 IAYDFVSFELSVYETDALLKNSATSIYKAVFPDLVQVLP--NPEINNLVILRNLKLEVFL 189

Query: 503 RRSNTFAIRKRL-QXVAMASCGSVDSEYVLSKDTG*LLQVPQSSSYLXRVPTWP 661
              + F +   L +    A+      + V+  + G + Q   +     R+P  P
Sbjct: 190 LSLSKFQVESPLAKDATCAAWSRRGKQCVIGFNNGTMSQYTPAGEIKLRIPRPP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,247
Number of Sequences: 5004
Number of extensions: 52128
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)